FC873311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_HUMAN (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30 Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 2 Query: 251 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544 +++ GWF E +WPG+A SL+VE++L +S YQ+++VF+S TYG VL+LDGVIQ TERDE +YQEMI +LPLCS PNP+ VL+IGGGDG VL E+ Sbjct: 14 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREV 111
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_NEUCR (Spermidine synthase OS=Neurospora crassa GN=spe-3 PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.436e-29 Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 2 Query: 266 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544 GWF EIS MWPG+A +LKVEK+L KS YQ+V++F+S+ +G VL+LD VIQ TERDE +YQEMITHL + S PNPK VLVIGGGDG VL E+ Sbjct: 12 GWFREISNMWPGQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREV 104
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPSY_YEAST (Spermine synthase OS=Saccharomyces cerevisiae GN=SPE4 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 9.016e-24 Identity = 48/95 (50.53%), Postives = 74/95 (77.89%), Query Frame = 2 Query: 266 GWFSEISPM-WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 GWF EI+ +PG+A ++ V+ IL++ +S++Q++++F++ YG VL+LDG++Q TE DE AYQEMITH+ + + NPK VL+IGGGDG VL E++ Sbjct: 13 GWFREINDKSFPGQAFTMTVDSILYEARSEFQDILIFRNKVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGVLREVA 107
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE1_AQUAE (Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.920e-19 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 2 Query: 308 HSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544 H V KIL+QGKS YQ + V +S +G++LILDGV+QL E+ E Y E + H+PL + PNP+NVL+IGGGDG L E+ Sbjct: 17 HCYTVSKILYQGKSPYQEIQVIESPEFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLIIGGGDGGTLREV 95
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_HYDS0 (Spermidine synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=speE PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 8.733e-19 Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 2 Query: 269 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544 +F E P P H + KIL++GKS YQ + V +S +GK+LILDGV+Q TE++E Y EM+TH + + NP+NVL+IGGGDG +L E+ Sbjct: 5 YFMERDPYAPIR-HCYGISKILYEGKSKYQEIQVVESHYFGKILILDGVVQFTEKNEFFYHEMLTHPVMFAHKNPQNVLIIGGGDGGILREV 95
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP7 (Spermidine synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=speE PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18 Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 2 Query: 284 SPMWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 +P+W H V+ +L+ K+D+Q++++F + +G+V+ LDGV+Q TERDE Y EM+TH+PL + N K+VL+IGGGDG +L E+S Sbjct: 4 NPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVS 96
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP3 (Spermidine synthase OS=Klebsiella pneumoniae (strain 342) GN=speE PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18 Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 2 Query: 284 SPMWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 +P+W H V+ +L+ K+D+Q++++F + +G+V+ LDGV+Q TERDE Y EM+TH+PL + N K+VL+IGGGDG +L E+S Sbjct: 4 NPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVS 96
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_PECCP (Spermidine synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=speE PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18 Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 2 Query: 320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 V+++L+ K+D+Q++++F++ G+V+ LDGV+Q TERDE Y EM+TH+PL S N K VL+IGGGDG +L E+S Sbjct: 21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVS 96
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ERWCT (Spermidine synthase OS=Erwinia carotovora subsp. atroseptica GN=speE PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18 Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 2 Query: 320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 V+++L+ K+D+Q++++F++ G+V+ LDGV+Q TERDE Y EM+TH+PL S N K VL+IGGGDG +L E+S Sbjct: 21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVS 96
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ERWT9 (Spermidine synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=speE PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18 Identity = 41/90 (45.56%), Postives = 64/90 (71.11%), Query Frame = 2 Query: 290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544 MW H+ V+KI+++ K+D+Q++++F+++ G+V+ LDGV+Q TERDE Y EM+TH+PL + PK VL+IGGGDG +L E+ Sbjct: 6 MWYETLHTGFGQYFSVDKIIYREKTDHQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGAPKRVLIIGGGDGAMLREV 95 The following BLAST results are available for this feature:
BLAST of FC873311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 173
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873311 ID=FC873311; Name=FC873311; organism=Citrus clementina; type=EST; length=547bpback to top |