FC873311

Overview
NameFC873311
Unique NameFC873311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14320 contig Ccv1_Contig14320:63..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_HUMAN (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30
Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 2
Query:  251 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            +++  GWF E   +WPG+A SL+VE++L   +S YQ+++VF+S TYG VL+LDGVIQ TERDE +YQEMI +LPLCS PNP+ VL+IGGGDG VL E+
Sbjct:   14 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREV 111          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_NEUCR (Spermidine synthase OS=Neurospora crassa GN=spe-3 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.436e-29
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 2
Query:  266 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            GWF EIS MWPG+A +LKVEK+L   KS YQ+V++F+S+ +G VL+LD VIQ TERDE +YQEMITHL + S PNPK VLVIGGGDG VL E+
Sbjct:   12 GWFREISNMWPGQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREV 104          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPSY_YEAST (Spermine synthase OS=Saccharomyces cerevisiae GN=SPE4 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.016e-24
Identity = 48/95 (50.53%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  266 GWFSEISPM-WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            GWF EI+   +PG+A ++ V+ IL++ +S++Q++++F++  YG VL+LDG++Q TE DE AYQEMITH+ + +  NPK VL+IGGGDG VL E++
Sbjct:   13 GWFREINDKSFPGQAFTMTVDSILYEARSEFQDILIFRNKVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGVLREVA 107          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE1_AQUAE (Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.920e-19
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 2
Query:  308 HSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            H   V KIL+QGKS YQ + V +S  +G++LILDGV+QL E+ E  Y E + H+PL + PNP+NVL+IGGGDG  L E+
Sbjct:   17 HCYTVSKILYQGKSPYQEIQVIESPEFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLIIGGGDGGTLREV 95          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_HYDS0 (Spermidine synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=speE PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.733e-19
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  269 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            +F E  P  P   H   + KIL++GKS YQ + V +S  +GK+LILDGV+Q TE++E  Y EM+TH  + +  NP+NVL+IGGGDG +L E+
Sbjct:    5 YFMERDPYAPIR-HCYGISKILYEGKSKYQEIQVVESHYFGKILILDGVVQFTEKNEFFYHEMLTHPVMFAHKNPQNVLIIGGGDGGILREV 95          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP7 (Spermidine synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=speE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  284 SPMWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            +P+W    H        V+ +L+  K+D+Q++++F +  +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  N K+VL+IGGGDG +L E+S
Sbjct:    4 NPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVS 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP3 (Spermidine synthase OS=Klebsiella pneumoniae (strain 342) GN=speE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  284 SPMWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            +P+W    H        V+ +L+  K+D+Q++++F +  +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  N K+VL+IGGGDG +L E+S
Sbjct:    4 NPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVS 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_PECCP (Spermidine synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=speE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+++L+  K+D+Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL S  N K VL+IGGGDG +L E+S
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVS 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ERWCT (Spermidine synthase OS=Erwinia carotovora subsp. atroseptica GN=speE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.393e-18
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+++L+  K+D+Q++++F++   G+V+ LDGV+Q TERDE  Y EM+TH+PL S  N K VL+IGGGDG +L E+S
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVS 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ERWT9 (Spermidine synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=speE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 41/90 (45.56%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            MW    H+       V+KI+++ K+D+Q++++F+++  G+V+ LDGV+Q TERDE  Y EM+TH+PL +   PK VL+IGGGDG +L E+
Sbjct:    6 MWYETLHTGFGQYFSVDKIIYREKTDHQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGAPKRVLIIGGGDGAMLREV 95          
The following BLAST results are available for this feature:
BLAST of FC873311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SPEE_HUMAN6.446e-3060.20Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV... [more]
SPEE_NEUCR1.436e-2966.67Spermidine synthase OS=Neurospora crassa GN=spe-3 ... [more]
SPSY_YEAST9.016e-2450.53Spermine synthase OS=Saccharomyces cerevisiae GN=S... [more]
SPEE1_AQUAE3.920e-1954.43Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1... [more]
SPEE_HYDS08.733e-1948.91Spermidine synthase OS=Hydrogenobaculum sp. (strai... [more]
SPEE_KLEP72.541e-1844.09Spermidine synthase OS=Klebsiella pneumoniae subsp... [more]
SPEE_KLEP32.541e-1844.09Spermidine synthase OS=Klebsiella pneumoniae (stra... [more]
SPEE_PECCP7.393e-1851.32Spermidine synthase OS=Pectobacterium carotovorum ... [more]
SPEE_ERWCT7.393e-1851.32Spermidine synthase OS=Erwinia carotovora subsp. a... [more]
SPEE_ERWT99.655e-1845.56Spermidine synthase OS=Erwinia tasmaniensis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873311 ID=FC873311; Name=FC873311; organism=Citrus clementina; type=EST; length=547bp
GTGTCAAGTCACTTAATAGTTGCCGGGGCATCCATGTAACGAAATACGAG
ATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAATA
ATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGCC
GTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAATA
ACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTATC
TCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCGG
TGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCTG
ATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCTT
ATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATCA
AGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAAACCCGAAAAACG
TTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCCGGAAATATCT
back to top