FC873311

Overview
NameFC873311
Unique NameFC873311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALHS (Spermidine synthase OS=Salmonella heidelberg (strain SL476) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALG2 (Spermidine synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALEP (Spermidine synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALDC (Spermidine synthase OS=Salmonella dublin (strain CT_02021853) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALCH (Spermidine synthase OS=Salmonella choleraesuis GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALAR (Spermidine synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SALA4 (Spermidine synthase OS=Salmonella agona (strain SL483) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 39/91 (42.86%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  290 MWPGEAHS-----LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            MW    H        V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:    6 MWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  269 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            WF+E        A S++V+ IL++ KS +Q + +  +  +GK LILD   Q TERDE  Y E+I+H+PL + PNP+NVLVIGGGDG  + E+
Sbjct:   12 WFTEYHNN--NVALSVRVKDILYREKSGFQEIEIIDTYDFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVREV 101          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_EUBE2 (Spermidine synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=speE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.669e-17
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  269 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            WFSE+    P     ++VEK LF G+SDYQ + VFQS  +GK L L+G +  +E+D   Y EM+ H+P+   P+ KNVL+IGGGDG V  E+
Sbjct:    4 WFSELHS--PHVKFDIRVEKQLFSGESDYQRIDVFQSPEFGKFLTLNGSVIFSEQDCFIYNEMVVHVPMSVHPDVKNVLIIGGGDGGVSKEL 93          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_SHISS (Spermidine synthase OS=Shigella sonnei (strain Ss046) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
The following BLAST results are available for this feature:
BLAST of FC873311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SPEE_SALHS3.669e-1742.86Spermidine synthase OS=Salmonella heidelberg (stra... [more]
SPEE_SALG23.669e-1742.86Spermidine synthase OS=Salmonella gallinarum (stra... [more]
SPEE_SALEP3.669e-1742.86Spermidine synthase OS=Salmonella enteritidis PT4 ... [more]
SPEE_SALDC3.669e-1742.86Spermidine synthase OS=Salmonella dublin (strain C... [more]
SPEE_SALCH3.669e-1742.86Spermidine synthase OS=Salmonella choleraesuis GN=... [more]
SPEE_SALAR3.669e-1742.86Spermidine synthase OS=Salmonella arizonae (strain... [more]
SPEE_SALA43.669e-1742.86Spermidine synthase OS=Salmonella agona (strain SL... [more]
SPEE_METJA3.669e-1746.74Probable spermidine synthase OS=Methanocaldococcus... [more]
SPEE_EUBE23.669e-1747.83Spermidine synthase OS=Eubacterium eligens (strain... [more]
SPEE_SHISS4.792e-1747.37Spermidine synthase OS=Shigella sonnei (strain Ss0... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873311 ID=FC873311; Name=FC873311; organism=Citrus clementina; type=EST; length=547bp
GTGTCAAGTCACTTAATAGTTGCCGGGGCATCCATGTAACGAAATACGAG
ATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAATA
ATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGCC
GTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAATA
ACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTATC
TCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCGG
TGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCTG
ATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCTT
ATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATCA
AGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAAACCCGAAAAACG
TTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCCGGAAATATCT
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