FC873311

Overview
NameFC873311
Unique NameFC873311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO7I (Spermidine synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO5E (Spermidine synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO57 (Spermidine synthase OS=Escherichia coli O157:H7 GN=speE PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO55 (Spermidine synthase OS=Escherichia coli (strain 55989 / EAEC) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO45 (Spermidine synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO27 (Spermidine synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_ECO24 (Spermidine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_CITK8 (Spermidine synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=speE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.792e-17
Identity = 36/76 (47.37%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            V+ +L+  K+D+Q++++F+++ +G+V+ LDGV+Q TERDE  Y EM+TH+PL +  + K+VL+IGGGDG +L E++
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVT 96          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  269 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEI 544
            WFSE+    P  A S+++ + L   K+ YQ + V  +  YG++L+LD +IQ T +DE  Y EMI H+PL + PNP+  LVIGGGDG V+ EI
Sbjct:    5 WFSELQT--PDLAISVRLNQTLHHEKTPYQELAVVDTEAYGRMLLLDNIIQTTVKDEFFYHEMIAHVPLNTHPNPRTALVIGGGDGGVVREI 94          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPS (Spermidine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.174e-17
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  290 MWPGEAH------SLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            +W  E H      S+KV++ L+ GKSD+Q + VF+S  +G    LDG++ +TE+DE  Y +MI H+P+ + PN KNVLVIG GDG  + E++
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELT 94          
The following BLAST results are available for this feature:
BLAST of FC873311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SPEE_ECO7I4.792e-1747.37Spermidine synthase OS=Escherichia coli O7:K1 (str... [more]
SPEE_ECO5E4.792e-1747.37Spermidine synthase OS=Escherichia coli O157:H7 (s... [more]
SPEE_ECO574.792e-1747.37Spermidine synthase OS=Escherichia coli O157:H7 GN... [more]
SPEE_ECO554.792e-1747.37Spermidine synthase OS=Escherichia coli (strain 55... [more]
SPEE_ECO454.792e-1747.37Spermidine synthase OS=Escherichia coli O45:K1 (st... [more]
SPEE_ECO274.792e-1747.37Spermidine synthase OS=Escherichia coli O127:H6 (s... [more]
SPEE_ECO244.792e-1747.37Spermidine synthase OS=Escherichia coli O139:H28 (... [more]
SPEE_CITK84.792e-1747.37Spermidine synthase OS=Citrobacter koseri (strain ... [more]
SPEE_MOOTA8.174e-1746.74Spermidine synthase OS=Moorella thermoacetica (str... [more]
SPEE_CLOPS8.174e-1744.57Spermidine synthase OS=Clostridium perfringens (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873311 ID=FC873311; Name=FC873311; organism=Citrus clementina; type=EST; length=547bp
GTGTCAAGTCACTTAATAGTTGCCGGGGCATCCATGTAACGAAATACGAG
ATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAATA
ATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGCC
GTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAATA
ACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTATC
TCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCGG
TGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCTG
ATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCTT
ATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATCA
AGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAAACCCGAAAAACG
TTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCCGGAAATATCT
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