FC873315

Overview
NameFC873315
Unique NameFC873315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4877 contig Ccv1_Contig4877:60..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.450e-19
Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  308 RFIPESSEKRVPCFRVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 811
            RF P + E      R++ + GE +   DF   +  E   ++Y  M+  +++D       R G+ SF     G EA  +  A A+    D++ P YR+ G+ L  G  L++   Q+ A KAD  KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ +    AV
Sbjct:    7 RFEPFTEEP----IRLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELFGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAV 170          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.424e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  350 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 811
            R++ + GE +   DF   +  E   ++Y  M+  +++D       R G+ SF     G EA  +  A A+    D++ P YR+ G+ L  G  L++   Q+ A KAD  KGRQMP H GSK LN+ T++SPIA+ +P A G A S+K+ +    AV
Sbjct:   17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAV 170          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  320 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            E   ++ P F++L++ GE++      ++S E   ++   MV  +++D       RQGR  FY  T G+EA  I S  AL  +DFILP YR+   ++W G  L     Q F        G Q+P     + +N +     I  Q  QA GVA  LKM  K A A+ YT
Sbjct:   15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLY----QAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYT 172          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYT 173          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYT 173          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAAN (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain N315) GN=pdhA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYT 173          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAAM (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYT 173          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAAC (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain COL) GN=pdhA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.885e-17
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  QA GVA++LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYT 173          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.294e-16
Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD+NG ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL  +D+ILP YR+   ++W G  L     + F       KG Q P     + +N ++    I  Q  Q  GVA++LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPL----TEAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQTAGVAFALKKRGKNAVAITYT 173          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.111e-16
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  326 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAYT 820
            ++ +    ++LD++G ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL ++DFILP YR+   ++W G  L       F       KG Q P     + +N ++    I  Q  Q  GVA+ LK   K+A A+ YT
Sbjct:   18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQFP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYT 173          
The following BLAST results are available for this feature:
BLAST of FC873315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ODBA_THET26.450e-1935.292-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODBA_THET88.424e-1935.902-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_BACST9.314e-1833.53Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAW7.885e-1730.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAS7.885e-1730.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAN7.885e-1730.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAM7.885e-1730.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAC7.885e-1730.91Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAR2.294e-1630.30Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAES5.111e-1630.30Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873315 ID=FC873315; Name=FC873315; organism=Citrus clementina; type=EST; length=821bp
TGTTCAATATCGAAAAAATTAAATGGCGATTTGGTTAACAAAATCAAGAG
CCATGGCCCAATGCTTACGGCAAAGAGTCGGTTTGCTGAGGATATTAAGT
GGCCAGAGTTGTTCATCCCCATCAACCATATTCCCACTTCAGCAATATAA
TTCACCATCACTTCCAAGCAAAACCCTTTTCTCGCCGGGGCGTTCCGAGT
CCACCGTTGCTGCCAATCAGCTGGATTCTTTGTCTTCCAGTGACAGCGAT
GATGATCATCAGGTCTTGGATTTTCCCGGAGGCAAAGTTGGATATACTTC
TGAAATGAGGTTCATTCCTGAGTCTTCAGAGAAAAGAGTGCCTTGTTTTC
GAGTTCTTGATGACAATGGAGAGCTAATCAAGGGCAGTGATTTTCAACAG
GTGAGCAAGGAAGTTGCTGTAAAGATGTATAGCCATATGGTCACACTGCA
GGTAATGGACTCTGTATTGTACGAAGCACAAAGGCAAGGGAGATTTTCTT
TCTACCTTACAACAATTGGTGAAGAAGCAATCAACATAGGATCAGCAGCT
GCACTCAGCGCCGATGATTTTATCTTGCCTCAGTACCGAGAGCCTGGAGT
ACTCTTATGGCGTGGCTACACATTGCAACAATTTGCAAACCAGGTGTTTG
CAAACAAGGCTGATGATGGGAAAGGCAGACAGATGCCAATTCATTATGGG
TCTAAAAAGCTTAACTACATCACCATATCGTCACCTATCGCTACACAACT
TCCTCAAGCTGTTGGTGTGGCTTATTCTCTTAAAATGGAGAAAAAGGATG
CCTGTGCAGTTGCTTATACTG
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