FC873326

Overview
NameFC873326
Unique NameFC873326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873326 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.845e-37
Identity = 78/142 (54.93%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   27 TAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQ-DGTSHYMKGFVLLLCYFVIGACFFVSNRP 449
            TA ++LLS ++V  IE  S SW I +SFIS+ILLPIVGNAAEHAGAI+FA K+KLD+SLGVA+GS+ QI++F VP CV+I W+MG  MDLN  L ET +            Q +GTS+Y K  +L+LCY ++ A FFV   P
Sbjct:  304 TAWVSLLSGYLVDAIEGTSVSWKIPISFISVILLPIVGNAAEHAGAIMFAMKDKLDLSLGVAIGSSIQISMFAVPFCVVIGWMMGAQMDLNLQLFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHEDP 445          
BLAST of FC873326 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.153e-36
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 3
Query:   30 AIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 449
            A I++LS ++V  I+ AS +W I V+FIS++LLP+VGN+A HA A++FA K+KLDISLGVA+GS+ QI++F +P CV++ W+MG  MDLNF+L ET S            QDGTS+ +KG +L LCY ++ A F+V   P
Sbjct:  297 AWISMLSYYLVDAIDGASKAWNIPVAFISVVLLPVVGNSAGHANAVMFAVKDKLDISLGVAIGSSIQISMFGIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHADP 436          
BLAST of FC873326 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.153e-28
Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 3
Query:   15 LVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFV--SNRPLDSDQNGV 473
            L+G T II+  ++F+VGTI++   S G+S +FI +I++PIVGNAAEH  +++ A K+K+D++LGVA+GS+ Q+A+FV P  V++ W++ + M LNF+  ET +             DG S++++G + L  Y +I   FF     + LDS  N +
Sbjct:  257 LLGTTVIISFCADFLVGTIDNVVESTGLSKTFIGLIVIPIVGNAAEHVTSVLVAMKDKMDLALGVAIGSSLQVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLSNYLILDGESNWLEGVMSLAMYILIAMAFFYYPDEKTLDSIGNSL 411          
BLAST of FC873326 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.154e-24
Identity = 52/142 (36.62%), Postives = 88/142 (61.97%), Query Frame = 3
Query:    9 ACLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFF 434
            A L  +T  ++L ++++VG+I+       IS +F+ +++LP+VGNAAEH  AI+ +++ ++D++LGVA+GS+ QIA+F+ P  VI+ WI+   + L F  LET              QDG +H+++G  LL  Y ++   FF
Sbjct:  267 AMLAIVTVFVSLCADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAIVVSYRGQMDLALGVAIGSSIQIALFLAPFLVIVGWIISQPLTLYFESLETVILFVSVFLVNYLIQDGATHWLEGVQLLALYAIVVLAFF 408          
BLAST of FC873326 vs. ExPASy Swiss-Prot
Match: YFKE_BACSU (Putative cation exchanger yfkE OS=Bacillus subtilis GN=yfkE PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.189e-21
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 3
Query:   15 LVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFV 437
            L   T ++A +SE +V T    +  +G S  FI +I++ IVGNAAEHA AII AFKNK+DI++ +A+GS  QIA+FV P+ VI S     +M L F L E  +             DG S++ +G  LL  Y ++   FF+
Sbjct:  210 LFAATIVVAYISENLVHTFHSVAEQFGWSELFIGVIIVAIVGNAAEHASAIIMAFKNKMDIAVEIAVGSTLQIAMFVAPVLVICSIFFPTSMPLVFTLPELVAMVSAVLLMIAISNDGDSNWFEGATLLAAYVIMAIGFFL 350          
The following BLAST results are available for this feature:
BLAST of FC873326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CAX6_ARATH2.845e-3754.93Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX4_ORYSJ9.153e-3650.71Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
VCX1_YEAST3.153e-2839.35Vacuolar calcium ion transporter OS=Saccharomyces ... [more]
VCX1_SCHPO6.154e-2436.62Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
YFKE_BACSU2.189e-2140.43Putative cation exchanger yfkE OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AB01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873326 ID=FC873326; Name=FC873326; organism=Citrus clementina; type=EST; length=786bp
GTGGATTTGCTTGTCTTGTTGGGATGACTGCTATCATTGCTTTACTATCA
GAATTTGTAGTGGGCACAATTGAGGATGCTTCAAATTCTTGGGGGATTTC
TGTGAGCTTTATCAGCATTATCTTGCTACCAATTGTTGGAAATGCAGCTG
AACATGCAGGAGCAATCATTTTTGCTTTCAAAAACAAGTTGGACATTTCA
CTGGGTGTTGCGTTGGGTTCTGCAACTCAAATTGCCGTATTTGTGGTTCC
ATTGTGCGTGATTATTTCTTGGATTATGGGGATTACAATGGATCTTAACT
TCAATCTCCTTGAGACTGGCTCTCTTGCTCTAGCAATTATTGCCACAGCC
TTCACTCTACAGGATGGAACTTCTCATTACATGAAAGGATTTGTTCTTCT
GCTATGCTACTTTGTTATTGGAGCATGCTTTTTTGTATCCAACAGACCAC
TCGACTCCGACCAGAATGGGGTCAAAATGGGCCTTCAATCATCAACTGGA
ACAGTCCTCAGAGCATGATAAGACTAATTGGGCCTTCTGGGGTCAGACTC
TTCAATTCGTCATTGAAACTTTCAAATATAAGGTGCATTGCTAATTCTTT
CATTTGGCGTCGCCAGCTGGAATTTAGAAGCCGGGCATAGCATTTTACAT
GTCGAGAAAGTTTCCATGGATGCCTTCTCATTTGAGATGAAACATTTCAA
AGTGAATTGGTGCCATTGAAGCTTGATGAAGGCACCGCAGGTTAAAGTAT
ATGTAATGTTCTAAAGATCTCTCTCAGATGGTTTTT
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