FC873351

Overview
NameFC873351
Unique NameFC873351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: GCN5_SCHPO (Histone acetyltransferase gcn5 OS=Schizosaccharomyces pombe GN=gcn5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 55/138 (39.86%), Postives = 74/138 (53.62%), Query Frame = 3
Query:   15 IPGLREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHS 428
            +PGL E GW  +    S+              K   A +  L   M +H  +WPF +PV   DVPDYYE+I+ PMDL TM  R+ + Q Y + E F+ D K +F N R+YN  +T YYK A RLE  FQ K++   +S
Sbjct:  324 VPGLMEVGWCKEMEELSK----------KPRPKPFFAVLEMLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQ-YESVEEFIRDAKYIFDNCRSYNDSNTTYYKNADRLEKFFQKKLRETEYS 450          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: GCN5_CANGA (Histone acetyltransferase GCN5 OS=Candida glabrata GN=GCN5 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 3
Query:   15 IPGLREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQ 413
            IPGL+EAGWTP+         +           H  A ++++L  + +H  AWPF  PV+  +VPDYYE IK+PMDL TM  ++E+ + Y   E F+ D + +  N R YN  +T YYK A RLE  F +KV+
Sbjct:  415 IPGLKEAGWTPE---------MDELAQRPKRGPHYAA-IQNILVELQNHAAAWPFLRPVNKEEVPDYYEFIKEPMDLSTMELKLENNK-YEKMEEFIYDARLVCNNCRLYNGENTSYYKYANRLEKFFNNKVK 536          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: GCN5_DEBHA (Histone acetyltransferase GCN5 OS=Debaryomyces hansenii GN=GCN5 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 52/146 (35.62%), Postives = 83/146 (56.85%), Query Frame = 3
Query:    9 EDIPGLREAGWTPDQWGHSRFRTLTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHSSTKIQQ 446
            +DIPGL E+GW+ +         +           H   FM +LL  + +H  AWPF  PV+  +V DYY++IK+PMDL TM  ++E+++ Y +F+ F+ D + +F N R+YN+  T Y+K AT+LE    +K++     S  + Q
Sbjct:  321 KDIPGLAESGWSEE---------MDKLAQKPKRGPHYN-FMVTLLSELTNHPSAWPFSTPVNKEEVGDYYDVIKEPMDLSTMESKLENDK-YDSFDQFLYDARLIFNNCRSYNADSTTYFKNATKLEKFMNNKIKDSAEYSHFLDQ 455          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: NU301_DROME (Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 48/110 (43.64%), Postives = 73/110 (66.36%), Query Frame = 3
Query:   99 ASNQKHLTAF----MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQS 416
            A+N K LT+     +++L+K M  H  AWPF EPVD ++ PDYY++IK+PMDL+ M  ++ES  Y    E F+ D+ ++F N R YN  ++ +YKCA  LES+F  K+++
Sbjct: 2551 AANMKKLTSNDVEELKNLIKQMQLHKSAWPFMEPVDPKEAPDYYKVIKEPMDLKRMEIKLESNTYTKLSE-FIGDMTKIFDNCRYYNPKESSFYKCAEALESYFVQKIKN 2659          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BPTF_HUMAN (Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  129 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQ 413
            ++ +L+S+  H  AWPF EPVD  D PDYY +IK+PMDL TM +RV+  +YY     FVAD+ ++F N R YN  D+ +Y+CA  LES F  K++
Sbjct: 2936 LKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQ-RRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLK 3029          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: NU301_CAEEL (Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans GN=nurf-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  138 LLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHSSTKIQQ 446
            LL+ + +H  + PF+ PVD  + PDY + IK PMDL T++K+VE  + Y+    FV DV +MF NA+TYN      +KCA  ++  F  K+       T  QQ
Sbjct: 2114 LLELLLEHRMSTPFRNPVDLNEFPDYEKFIKKPMDLSTITKKVERTE-YLYLSQFVNDVNQMFENAKTYNPKGNAVFKCAETMQEVFDKKLIDVREQMTARQQ 2215          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: CECR2_HUMAN (Cat eye syndrome critical region protein 2 OS=Homo sapiens GN=CECR2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 40/90 (44.44%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  129 MRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHF 398
            M  +L  +  H D+WPF EPVD    P+YY+IIK PMD+ +M K++     Y T E FV D+K MF N R YN   + Y K +  LE  F
Sbjct:  443 MYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNG-GLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCF 531          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BRD4_MOUSE (Bromodomain-containing protein 4 OS=Mus musculus GN=Brd4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  117 LTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHSSTKI 440
            L   +R +LK++  H  AWPF++PVDA   ++PDYY+IIK PMD+ T+ KR+E+  YY   +  + D   MF N   YN P       A  LE  F  K+       T+I
Sbjct:   63 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN-NYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEETEI 171          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BRD4_HUMAN (Bromodomain-containing protein 4 OS=Homo sapiens GN=BRD4 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  117 LTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQSGLHSSTKI 440
            L   +R +LK++  H  AWPF++PVDA   ++PDYY+IIK PMD+ T+ KR+E+  YY   +  + D   MF N   YN P       A  LE  F  K+       T+I
Sbjct:   63 LQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLEN-NYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEETEI 171          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: FSH_DROME (Homeotic protein female sterile OS=Drosophila melanogaster GN=fs(1)h PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  105 NQKHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQS 416
            N   L   +++++K +  H  +WPF++PVDA+  ++PDY++IIK PMD+ T+ KR+E+  YY + +  + D   MF N   YN P       A  LE  F  K++S
Sbjct:   35 NTNQLQYLIKTVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLEN-NYYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQKIES 139          
The following BLAST results are available for this feature:
BLAST of FC873351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
GCN5_SCHPO8.785e-2239.86Histone acetyltransferase gcn5 OS=Schizosaccharomy... [more]
GCN5_CANGA8.785e-2240.60Histone acetyltransferase GCN5 OS=Candida glabrata... [more]
GCN5_DEBHA1.957e-2135.62Histone acetyltransferase GCN5 OS=Debaryomyces han... [more]
NU301_DROME5.694e-2143.64Nucleosome-remodeling factor subunit NURF301 OS=Dr... [more]
BPTF_HUMAN4.820e-2048.42Nucleosome-remodeling factor subunit BPTF OS=Homo ... [more]
NU301_CAEEL2.317e-1439.81Nucleosome-remodeling factor subunit NURF301-like ... [more]
CECR2_HUMAN1.150e-1344.44Cat eye syndrome critical region protein 2 OS=Homo... [more]
BRD4_MOUSE2.562e-1339.09Bromodomain-containing protein 4 OS=Mus musculus G... [more]
BRD4_HUMAN2.562e-1339.09Bromodomain-containing protein 4 OS=Homo sapiens G... [more]
FSH_DROME4.370e-1336.79Homeotic protein female sterile OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AC12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873351 ID=FC873351; Name=FC873351; organism=Citrus clementina; type=EST; length=735bp
TCAAAGTCGAGGACATTCCTGGCTTGAGAGAAGCTGGATGGACTCCTGAT
CAATGGGGCCATTCACGGTTTAGAACTTTAACTGCTGCTACTGACGGTGC
ATCAAATCAGAAGCATTTAACTGCATTTATGCGCTCACTTCTGAAGTCGA
TGCATGACCATGTTGATGCTTGGCCGTTCAAGGAACCAGTTGATGCCCGC
GATGTCCCCGATTACTACGAAATCATCAAAGATCCCATGGATCTGAGGAC
AATGTCAAAAAGAGTGGAGTCAGAACAATATTATGTGACATTTGAGATGT
TTGTTGCGGATGTCAAGAGGATGTTTGCCAATGCACGCACCTATAATTCA
CCCGACACCATTTATTATAAATGTGCAACCAGGCTGGAATCCCACTTTCA
GAGCAAAGTTCAGTCGGGACTACACTCTAGCACCAAAATTCAGCAGTAAA
GAATTCTGAACGTTCGTACTTGATGTGTTATAGTTCAATCGGGTTCCTTC
AGTATTGGTTTTAGATGTAGCATGGCATATGTAATATTGTTAATGTTATA
GATTAATTATGTATTCTATCTTCCTGGTATCTGTCTGTTTTAGTGTTTTA
CTGTATTGTCCTGGCCCTGCCCGCCGCCCCCCTCTTCCTTCTCGGGTTAA
TTTCGATGTATGAGAATCTTCAAAACATCTTTCAAATTATTGTAAATCTC
AATTTATTCTCAAAAAAAAAAAAAAAAAAAAAAAA
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