FC873351

Overview
NameFC873351
Unique NameFC873351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BAZ1A_MOUSE (Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus GN=Baz1a PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   78 LTAATDGASNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKVQS-GLHSS 431
            L   + G     H  +    L+  +  H D+WPF + V    VPDYY+IIK P+ L  + ++V   +Y +  E F+ D++ MF+N   YN  +T   K  TRL++ F  + Q  GLH S
Sbjct: 1420 LNRRSSGRQGGVHELSAFEQLVVELVRHDDSWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLASE-FIDDIELMFSNCFEYNPRNTSEAKAGTRLQAFFHIQAQKLGLHVS 1537          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BRD1_HUMAN (Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  117 LTAFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRL 386
            LT  +RS+L  + D   A  F +PV  ++VPDY + IK PMD  TM KR+E+ Q Y     F  D   +  N   YN+ DT++Y+ A RL
Sbjct:  567 LTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEA-QGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRL 655          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BRDT_MOUSE (Bromodomain testis-specific protein OS=Mus musculus GN=Brdt PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  117 LTAFMRSLLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKV 410
            L    R +LK++  H  +WPF++PVDA    +PDYY IIK PMDL T+ KR+E+ +YY      + D   MF+N   YN         A  LE  F  K+
Sbjct:   31 LQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLEN-KYYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKL 129          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: YCK2_SCHPO (Bromodomain-containing protein C1450.02 OS=Schizosaccharomyces pombe GN=SPCC1450.02 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  102 SNQKHLTAFMRSLLKSMHDHVDAWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSK 407
            S  +  +  ++ L K  ++   A+PF +PVD  A D PDY+++IK+PMDL T+  ++   + Y T E F +D+  MF N  TYN P T  +    +LE+ F+ K
Sbjct:  255 SQMRFCSTVLKELYKRQYESF-AFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNE-YSTLEEFESDILLMFNNCFTYNPPGTPVHVMGRQLENVFKEK 356          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BRD3_HUMAN (Bromodomain-containing protein 3 OS=Homo sapiens GN=BRD3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  138 LLKSMHDHVDAWPFKEPVDA--RDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKV 410
            ++K++  H  AWPF +PVDA   ++PDY++IIK+PMD+ T+ KR+E+  Y+   E  + D   MF N   YN P       A  LE  F  KV
Sbjct:   46 VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASEC-MQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKV 137          

HSP 2 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 36/101 (35.64%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  111 KHLTAFMRSLLKSMHDHVDAWPFKEPVDAR--DVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSK 407
            ++  + +R +L   H    AWPF +PVDA   ++ DY++IIK PMDL T+ ++++  + Y   + F ADV+ MF+N   YN PD      A +L+  F+ +
Sbjct:  313 RYCDSILREMLSKKHAAY-AWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGRE-YPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMR 411          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: Y3800_DICDI (Ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 OS=Dictyostelium discoideum GN=DDB_G0293800 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  105 NQKHLTAFMRSLLKSMHDHVDAWPFKEPVD--ARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSK 407
            N+K+LT F + L+  M     +  F+ PVD  A  +PDY+++IK PMDL T+  ++++  Y  T + F ADV+ MF NA TYN+  +  +K A  L + F  K
Sbjct:  518 NEKNLT-FCKGLINGMFKKKTSLAFQRPVDPLAEGIPDYFDVIKHPMDLGTIKGKLDNNGYS-TIKDFAADVRLMFENALTYNADSSPVWKHAKTLLNAFDQK 618          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: TAF1_DROME (Transcription initiation factor TFIID subunit 1 OS=Drosophila melanogaster GN=Taf1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  165 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSKV 410
            ++WPF +PV+ + V DYY +IK PMDL T+ K +E+ +Y+   E ++AD++ +  N   YN  DT Y K + ++  + Q+++
Sbjct: 1613 ESWPFLKPVNKKQVKDYYTVIKRPMDLETIGKNIEAHRYHSRAE-YLADIELIATNCEQYNGSDTRYTKFSKKILEYAQTQL 1693          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: BAZ2B_HUMAN (Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 3
Query:  123 AFMRSLLKSMHDHVDAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRLESHFQSK 407
            A    +L  M  H DAWPF  PV+ + VP Y ++IK PMD  T+ +++ S Q Y   E F  DV+ +F N  T+N  D+   +    +  +F+ K
Sbjct: 2067 ALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQ-YPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKK 2160          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: TAF1_HUMAN (Transcription initiation factor TFIID subunit 1 OS=Homo sapiens GN=TAF1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  165 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRL 386
            D+WPF  PV+ + VPDYY++I +PMDL T+ K + S+  Y + E F+ DV  + AN+  YN P++ Y K A  +
Sbjct: 1524 DSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 1596          
BLAST of FC873351 vs. ExPASy Swiss-Prot
Match: TAF1_MOUSE (Transcription initiation factor TFIID subunit 1 OS=Mus musculus GN=Taf1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  165 DAWPFKEPVDARDVPDYYEIIKDPMDLRTMSKRVESEQYYVTFEMFVADVKRMFANARTYNSPDTIYYKCATRL 386
            D+WPF  PV+ + VPDYY++I  PMDL T+ K + S+  Y + E F+ DV  + AN+  YN P++ Y K A  +
Sbjct: 1545 DSWPFHHPVNKKFVPDYYKVIVSPMDLETIRKNI-SKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 1617          
The following BLAST results are available for this feature:
BLAST of FC873351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
BAZ1A_MOUSE6.310e-1234.45Bromodomain adjacent to zinc finger domain protein... [more]
BRD1_HUMAN1.076e-1141.11Bromodomain-containing protein 1 OS=Homo sapiens G... [more]
BRDT_MOUSE1.406e-1140.00Bromodomain testis-specific protein OS=Mus musculu... [more]
YCK2_SCHPO1.836e-1136.54Bromodomain-containing protein C1450.02 OS=Schizos... [more]
BRD3_HUMAN1.836e-1140.86Bromodomain-containing protein 3 OS=Homo sapiens G... [more]
Y3800_DICDI2.398e-1138.83Ankyrin repeat, bromo and BTB domain-containing pr... [more]
TAF1_DROME2.398e-1136.59Transcription initiation factor TFIID subunit 1 OS... [more]
BAZ2B_HUMAN3.132e-1135.79Bromodomain adjacent to zinc finger domain protein... [more]
TAF1_HUMAN4.090e-1143.24Transcription initiation factor TFIID subunit 1 OS... [more]
TAF1_MOUSE5.342e-1143.24Transcription initiation factor TFIID subunit 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AC12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873351 ID=FC873351; Name=FC873351; organism=Citrus clementina; type=EST; length=735bp
TCAAAGTCGAGGACATTCCTGGCTTGAGAGAAGCTGGATGGACTCCTGAT
CAATGGGGCCATTCACGGTTTAGAACTTTAACTGCTGCTACTGACGGTGC
ATCAAATCAGAAGCATTTAACTGCATTTATGCGCTCACTTCTGAAGTCGA
TGCATGACCATGTTGATGCTTGGCCGTTCAAGGAACCAGTTGATGCCCGC
GATGTCCCCGATTACTACGAAATCATCAAAGATCCCATGGATCTGAGGAC
AATGTCAAAAAGAGTGGAGTCAGAACAATATTATGTGACATTTGAGATGT
TTGTTGCGGATGTCAAGAGGATGTTTGCCAATGCACGCACCTATAATTCA
CCCGACACCATTTATTATAAATGTGCAACCAGGCTGGAATCCCACTTTCA
GAGCAAAGTTCAGTCGGGACTACACTCTAGCACCAAAATTCAGCAGTAAA
GAATTCTGAACGTTCGTACTTGATGTGTTATAGTTCAATCGGGTTCCTTC
AGTATTGGTTTTAGATGTAGCATGGCATATGTAATATTGTTAATGTTATA
GATTAATTATGTATTCTATCTTCCTGGTATCTGTCTGTTTTAGTGTTTTA
CTGTATTGTCCTGGCCCTGCCCGCCGCCCCCCTCTTCCTTCTCGGGTTAA
TTTCGATGTATGAGAATCTTCAAAACATCTTTCAAATTATTGTAAATCTC
AATTTATTCTCAAAAAAAAAAAAAAAAAAAAAAAA
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