FC873352

Overview
NameFC873352
Unique NameFC873352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB2_CANAL (Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 57/226 (25.22%), Postives = 97/226 (42.92%), Query Frame = 1
Query:  115 FNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKS----------ILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE 762
            F++ +HV +++         Y   E  R+   ++ ++ L  +  L  + +  V D+++          D   G F  F                 H+G ++ ST  AL +LK        ++  +          ++  +  LQ  DGSF    +G E D RFVY A +   LL   +    + A A+I+ C ++DGGFGL PGSESH    +  V +L +M  ++
Sbjct:   13 FDKSKHVQYIVEQESHRSFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCW-------DDKTGAFGSFP---------------KHDG-HILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLPDGSFQGDKYG-EVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALAIMNKLD 214          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: FNTB_YEAST (Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae GN=RAM1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  409 SNLASTYCA---LAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPG-SESHGGGTYCAVASLRLM 750
            S+LASTY A   L++   +   +  ID K I   + +L++ +G F       E D R +YCA +I  LL   +    E    Y+ NCQ+Y+GGFG  P   E+HGG T+CA ASL ++
Sbjct:  155 SHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAIL 272          
The following BLAST results are available for this feature:
BLAST of FC873352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PGTB2_CANAL4.392e-1225.22Geranylgeranyl transferase type-2 subunit beta OS=... [more]
FNTB_YEAST4.392e-1238.14Protein farnesyltransferase subunit beta OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873352 ID=FC873352; Name=FC873352; organism=Citrus clementina; type=EST; length=812bp
TTTCTCTCTTCGGCCCTGAAAATGGAACCAGCTACAGAGAATGAGTGGGA
CCGGCTATCATCATCTTCATCGGACGGAGAAGAACAAGCAGCATCAGATG
GTTCATCATCACAATTCAACAGGCAGCAACACGTGGCGTTCCTGATGATG
ATGTACGAATCGTTGCCGCATCACTACCAGTACCAGGAGATCAACCGCAT
CACTCTCGCTCACTTTGCCATCTCCGGCCTTTGCCTCCTCGGTGCCTTAG
ATCGCGTTGACAAGGATGCGGTGTCAGATTGGGTTTTATCACTGAAAGCT
CACCCAAGTAATAAAGCTGACCTGACGAATGGAGAATTCTATGGATTCCA
CGGTTCTCCAAGTTCTCAGCTCCATCCAGATGATAATGGGGTTTTGATGC
ACAATGGTAGTAACTTGGCAAGCACTTACTGTGCCCTAGCCATACTAAAG
GCCGTTGGTTATAATTTTGCAAACATTGACAGCAAATCAATATTGACATC
AATGAGAAATCTTCAACAGCACGATGGGAGTTTTATGCCGATCCATTTTG
GAGCAGAGAAGGATCTTCGGTTTGTATATTGTGCTGCTGCTATCTGCTTT
TTGTTGGAGGATTGGAGTGGCATGGACCGGGAGAGAGCAAAGGCGTACAT
TTTAAATTGCCAGTCATATGACGGTGGGTTTGGTTTGACTCCTGGTTCAG
AATCACATGGGGGTGGTACATACTGTGCTGTCGCATCTCTCCGTTTGATG
GGATTCATTGAAGACAATGTTCTTTCTAAAAATATGTCATCTTCAATTAT
TGACCTGCCGTT
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