FC873354

Overview
NameFC873354
Unique NameFC873354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10146 contig Ccv1_Contig10146:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD2_HORVU (Defender against cell death 2 OS=Hordeum vulgare GN=DAD2 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.226e-47
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M ++ G DA+ L  SL  AYAATPT LKIIDLYV FAV TAL+QVVYM IVGSFPFNSFLSGVLS +GTAVL VCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MPKAAG-DAKLLIQSLNKAYAATPTNLKIIDLYVVFAVATALVQVVYMGIVGSFPFNSFLSGVLSSIGTAVLGVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_HORVU (Defender against cell death 1 OS=Hordeum vulgare GN=DAD1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.579e-46
Identity = 95/115 (82.61%), Postives = 101/115 (87.83%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M ++ G DA+ L  SL  AYAATPT LKIIDLYV FAV TAL+QVVYM IVGSFPFNSFLSGVLSC+GTAVLAVC RIQVNKDNKEFKDL PERAFADFVLC+LVLHLVIMNFLG
Sbjct:    1 MPKAAG-DAKLLIQSLNKAYAATPTNLKIIDLYVVFAVVTALLQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCHRIQVNKDNKEFKDLAPERAFADFVLCSLVLHLVIMNFLG 114          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_MAIZE (Defender against cell death 1 (Fragment) OS=Zea mays GN=DAD1 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.289e-36
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3
Query:  126 AVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            AV TALIQV YM +VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 AVATALIQVAYMGLVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 79          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_BOVIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Bos taurus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    +ATP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSATPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_RAT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_PIG (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_MESAU (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_HUMAN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Homo sapiens GN=DAD1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.612e-25
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_DROME (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Drosophila melanogaster GN=CG13393 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.411e-25
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   84 TPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKE-FKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            TP  LK++D+Y+G+ + T +IQ VY  +VG+FPFNSFLSG +S V   VLAVCLR+Q N  NK  F  + PER FADF+  +++LHLV+MNF+G
Sbjct:   19 TPKKLKLVDIYLGYILLTGIIQFVYCCLVGTFPFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAHVILHLVVMNFIG 112          
The following BLAST results are available for this feature:
BLAST of FC873354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD2_HORVU9.226e-4783.48Defender against cell death 2 OS=Hordeum vulgare G... [more]
DAD1_HORVU4.579e-4682.61Defender against cell death 1 OS=Hordeum vulgare G... [more]
DAD1_MAIZE3.289e-3693.67Defender against cell death 1 (Fragment) OS=Zea ma... [more]
DAD1_BOVIN1.172e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_RAT2.612e-2552.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_PIG2.612e-2552.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MOUSE2.612e-2552.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MESAU2.612e-2552.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_HUMAN2.612e-2552.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_DROME3.411e-2555.32Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873354 ID=FC873354; Name=FC873354; organism=Citrus clementina; type=EST; length=600bp
CAGATTACAGAGAGGAAATGGCGAGATCGACCGGCAAAGACGCTCAAGCC
CTTTTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACGACTCTTAA
GATCATCGATCTGTATGTGGGTTTCGCGGTTTTTACTGCCTTAATTCAGG
TAGTTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTCTTTCA
GGAGTACTTTCTTGTGTTGGGACGGCAGTCCTTGCTGTTTGTCTACGTAT
TCAAGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGAGCGAG
CTTTTGCAGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATG
AATTTCCTTGGATAAACCTTGACCCTGCGTCAACTTAAAATACAATTTTT
CTTGGTCGATGACAGTGTGACTAGCTGTAAAAGTTAGTTACGACATTAAT
GCGGATATTTTTCTTAGGATGTGAACTTACTATAAATGAAGATGTGGACC
ATTTTTGGATCCTTTTAGTTCTATATTTACNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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