FC873354

Overview
NameFC873354
Unique NameFC873354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_XENLA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1 OS=Xenopus laevis GN=dad1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 51/96 (53.12%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   78 AATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            ++TP  LK++D Y+ + + T  +Q +Y  +VG+FPFNSFLSG +S VG+ +LAVCLRIQ+N  NK +F+ + PERAFADF+  N +LHLV++NF+G
Sbjct:   18 SSTPQRLKLLDAYLLYILLTGALQFLYCLLVGTFPFNSFLSGFISSVGSFILAVCLRIQINPQNKSDFQGISPERAFADFLFANTILHLVVVNFIG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_PONAB (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pongo abelii GN=DAD1 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.434e-24
Identity = 52/101 (51.49%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   63 LRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLSG +SCVG+ +LAV LRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVRLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_CAEEL (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad-1 OS=Caenorhabditis elegans GN=dad-1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.434e-24
Identity = 53/94 (56.38%), Postives = 72/94 (76.60%), Query Frame = 3
Query:   84 TPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            T + LKIID Y+ + +FT + Q +Y  +VG+FPFNSFLSG +S V + VLA CLR+QVN++N+ EF  +  ERAFADF+  NL+LHLV++NFLG
Sbjct:   20 TSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFISTVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILHLVVVNFLG 113          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_DICDI (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Dictyostelium discoideum GN=ost2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.445e-23
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 3
Query:   48 ALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            ++  S   +Y+ TP  LKIIDL++ +   T +I   Y  +VG++PFNSFL+  +S VG  VL VCLRIQ+N  N   K +  ERAF D++LCNL+LHLV+ NFLG
Sbjct:   16 SIVKSFFESYSKTPQKLKIIDLFLIYTFITGVIVFTYCCLVGTYPFNSFLAAFISTVGCFVLTVCLRIQINPINNFGKTISIERAFTDYLLCNLILHLVVFNFLG 120          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_CHICK (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Gallus gallus GN=DAD1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.113e-23
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 3
Query:   78 AATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            + T + LK++D Y+ + + T  +Q  Y   VG+FPFNSFLSG +S VG+ +L VCLRIQ+N  NK EF+ + PERAFADF+  N +LHLV++NF+G
Sbjct:   28 SGTSSRLKVLDAYLLYVMLTGALQFGYCLGVGTFPFNSFLSGFISAVGSFILGVCLRIQINPQNKGEFQGISPERAFADFLFANTILHLVVINFVG 123          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: OST2_SCHPO (Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost2 OS=Schizosaccharomyces pombe GN=ost2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 3
Query:   84 TPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKD--------LPPERAFADFVLCNLVLHLVIMNFLG 362
            T  +LK ID ++GF V    +Q  Y  +VG++PFNSFLSG +SCVG  V+ V  R+ + +   +            P +RAF +F   +LVLH   +NFLG
Sbjct:   22 TNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLHFFAVNFLG 122          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: OST2_YEAST (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST2 OS=Saccharomyces cerevisiae GN=OST2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 3
Query:   39 DAQALFHSLRSAYAATPTT---LKIIDLYVGFAVFTALIQVVYMAIV-GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFL 359
            D Q  F + + AY A       LK+ID +  F V   +IQ  ++ ++  +FPFN+FL+G + CVG  VL + LR+Q+      F  +   RAFA+F++ +L+LH V ++F+
Sbjct:   22 DFQETFKTSKRAYFAQIEKYPKLKLIDTFCFFLVLLGVIQCTFIILIRDNFPFNAFLAGFIICVGQFVLLMSLRLQL---CNSFPGISKNRAFAEFIVASLILHFVCLHFI 129          
The following BLAST results are available for this feature:
BLAST of FC873354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_XENLA9.926e-2553.13Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_PONAB6.434e-2451.49Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_CAEEL6.434e-2456.38Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_DICDI2.445e-2349.52Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_CHICK7.113e-2352.08Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
OST2_SCHPO6.673e-1339.60Probable dolichyl-diphosphooligosaccharide--protei... [more]
OST2_YEAST7.378e-1236.04Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BG03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873354 ID=FC873354; Name=FC873354; organism=Citrus clementina; type=EST; length=600bp
CAGATTACAGAGAGGAAATGGCGAGATCGACCGGCAAAGACGCTCAAGCC
CTTTTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACGACTCTTAA
GATCATCGATCTGTATGTGGGTTTCGCGGTTTTTACTGCCTTAATTCAGG
TAGTTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTCTTTCA
GGAGTACTTTCTTGTGTTGGGACGGCAGTCCTTGCTGTTTGTCTACGTAT
TCAAGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGAGCGAG
CTTTTGCAGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATG
AATTTCCTTGGATAAACCTTGACCCTGCGTCAACTTAAAATACAATTTTT
CTTGGTCGATGACAGTGTGACTAGCTGTAAAAGTTAGTTACGACATTAAT
GCGGATATTTTTCTTAGGATGTGAACTTACTATAAATGAAGATGTGGACC
ATTTTTGGATCCTTTTAGTTCTATATTTACNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top