FC873355

Overview
NameFC873355
Unique NameFC873355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            P   R+LV+++   +KT  GI++P+    K I GKV+AVG G    +GK IP+ VK+GD VL  +YGG EVK+  ++Y +  ++ ILG L
Sbjct:    5 PLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGIL 94          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_HOLOB (10 kDa chaperonin OS=Holospora obtusa GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.912e-13
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            P   R+LV+++    +T+ GI++P+    K I G V+AVGPGARD  G  I + VK+GD VL  ++ G EVKL  + Y + ++  + GT+
Sbjct:    6 PLGDRILVKRVEAEERTSGGIVIPDTAKEKPIEGTVIAVGPGARDPQGNLIALEVKQGDRVLFGKWSGTEVKLSGEDYIVMKESDVFGTI 95          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH102_BRAJA (10 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groS2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTSKLIS-GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 333
            P   RV+V++I    KT  GI++P+   +  S G+V+AVGPG RD +GK IP+ V+ GD VL  ++ G EVK+  ++  + ++  I+G L D
Sbjct:    5 PLHDRVVVKRIDAEEKTAGGIIIPDTVKEKPSQGEVIAVGPGGRDESGKLIPIDVRVGDRVLFGKWSGTEVKIDTQELLIMKESDIMGVLAD 96          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH102_RHOPA (10 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groS2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTSKLIS-GKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTLHD 333
            P   RV+V++I    KT  GI++P+   +  S G++VAVGPG RD  GK IP+ +K GD VL  ++ G EVK+  K+  + ++  I+G + D
Sbjct:    5 PLHDRVVVKRIDAEEKTAGGIIIPDTAKEKPSQGEIVAVGPGGRDEAGKLIPIDLKVGDRVLFGKWSGTEVKIDGKELLIMKESDIMGVITD 96          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_OPITP (10 kDa chaperonin OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   52 RLIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            ++ P   RVLV+ I    +   GI++P+    K    KV+A+G G +  +GK  P  VK GD VL+ +YGG EVKL +KKY L  ++ ILG +
Sbjct:    5 KIKPIGDRVLVQHIEEKEQVRGGIIIPDSAKEKPQEAKVIALGTGKKGEDGKVTPFEVKVGDRVLISKYGGTEVKLDEKKYTLVREDDILGVI 97          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_STACT (10 kDa chaperonin OS=Staphylococcus carnosus (strain TM300) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   55 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESIL 318
            L P  +RV+++++     T SGI+L EK   K   GKV+AVGPG    NG+ +   VKEGDTV+  +Y G+EV++G+ KY +  +E +L
Sbjct:    2 LKPLGNRVIIKRVESEQTTKSGIVLTEKAKEKSNEGKVIAVGPGRLLDNGERVTPEVKEGDTVVFEQYAGSEVQVGEDKYLVISEEEVL 90          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_PELUB (10 kDa chaperonin OS=Pelagibacter ubique GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 321
            P   RVL+E +    KT  GI++P+    K   GKV+AVG GA+  +GK IP+ VK GD VL  ++ G E+K+  K+Y + ++  I+G
Sbjct:    5 PLHDRVLIEVLDSSEKTAGGIIIPDTAQEKPQEGKVIAVGGGAKTEDGKLIPMDVKVGDKVLFGKWSGTEIKIDGKEYSIMKESDIMG 92          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_DESAH (10 kDa chaperonin OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1
Query:   55 LIPAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            L P   R+LVE++    KT  GI++P+    K   GKVVA G G    +GK IP+ +K GDT+L  +YGG EVK+    Y +   + +LG +
Sbjct:    3 LRPLQDRILVERVQETEKTKGGIIIPDTAKEKPAEGKVVASGNGRVGEDGKLIPMDLKVGDTILFSKYGGTEVKIDGTDYLIMRQDDVLGVI 94          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH101_RHOPA (10 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            P   RV+V++I   +KT  GI++P+    K   G+V+AVGPG RD  GK  P+ VK GD VL  ++ G E+KL  ++  + ++  I+G +
Sbjct:    8 PLHDRVVVKRIDAETKTKGGIIIPDSAKEKPQEGQVIAVGPGGRDETGKLTPIDVKVGDRVLFGKWSGTEIKLDGEELLIMKESDIMGVV 97          
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH10_BEII9 (10 kDa chaperonin OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            P   RV+V+++    KT  GI++P+    K   G+++AVGPG RD +GK IP+ VK GD +L  ++ G EVK+  +   + ++  ILG +
Sbjct:    5 PLHDRVVVKRLESEEKTKGGIIIPDSAKEKPQEGEIIAVGPGGRDESGKLIPLDVKAGDKILFGKWSGTEVKIDGQDLLIMKESDILGVV 94          
The following BLAST results are available for this feature:
BLAST of FC873355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CH10_DESOH4.621e-1443.3310 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH10_HOLOB3.912e-1340.0010 kDa chaperonin OS=Holospora obtusa GN=groS PE=3... [more]
CH102_BRAJA5.109e-1340.2210 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH102_RHOPA6.673e-1340.2210 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH10_OPITP1.138e-1240.8610 kDa chaperonin OS=Opitutus terrae (strain DSM 1... [more]
CH10_STACT1.487e-1242.7010 kDa chaperonin OS=Staphylococcus carnosus (stra... [more]
CH10_PELUB2.536e-1240.9110 kDa chaperonin OS=Pelagibacter ubique GN=groS P... [more]
CH10_DESAH2.536e-1240.2210 kDa chaperonin OS=Desulfobacterium autotrophicu... [more]
CH101_RHOPA2.536e-1238.8910 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH10_BEII93.312e-1237.7810 kDa chaperonin OS=Beijerinckia indica subsp. in... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873355 ID=FC873355; Name=FC873355; organism=Citrus clementina; type=EST; length=599bp
AAGTTTTGGTGAAGTCCCCTCCTGTTTGTTCGTGAAGAGAAAATGGCAAA
GAGATTGATTCCAGCATTCAGTCGCGTTTTGGTTGAAAAAATAATCCCTC
CTTCCAAAACCAACTCCGGAATCTTACTTCCTGAGAAAACAAGCAAGCTG
ATTTCTGGAAAAGTTGTTGCTGTGGGTCCTGGAGCTCGTGATGTCAATGG
AAAGTTTATTCCTGTAAGTGTGAAGGAAGGAGATACTGTTCTTTTGCCCG
AGTATGGGGGGGCTGAAGTTAAGCTTGGTGATAAAAAGTACCATCTGTAC
GAGGATGAGTCCATCCTGGGAACACTTCATGACCATTGAAAAATATTGCT
CTTTGATTGCATCTAGTAATGGCAGCTTTAATAATTCAAAGTTGTCGGCT
GGAGCAGCCTTGTGACTGAATATTAGTGCTATATACATTTAAACTTATTT
AGGACTTGAGAAGTGTTTTCATATAACTTGATGTACTAGTTCAGAAACTA
ATTTGCGACTGAGAATTGCTAAGAATTGCTAAGGGCTGCAGTTTATAGCG
CATTATTCGAAGTGCCCTTTGGTCAAAAAAAAAAAAAAAAAAAAAAAAA
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