FC873355

Overview
NameFC873355
Unique NameFC873355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH103_RHIME (10 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILG 321
            P   RV++ +    +++  GI++P+    K   G+V+AVGPG+RD +GK IP+ VK GDT+L  ++ G EVK+  +   + ++  I+G
Sbjct:    5 PLLDRVVIRRAEGNTQSKGGIIIPDTAKEKPQEGEVIAVGPGSRDESGKLIPLDVKIGDTILFGKWSGTEVKIDGEDLLIMKESDIMG 92
[Close]
BLAST of FC873355 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 33/90 (36.67%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:   61 PAFSRVLVEKIIPPSKTNSGILLPEKTS-KLISGKVVAVGPGARDVNGKFIPVSVKEGDTVLLPEYGGAEVKLGDKKYHLYEDESILGTL 327
            P   RVLV +I    KT  GI++P+    K   G+++A G G R+  G+ IP+ VK GD VL  ++ G EVK+  + Y + ++  +LG +
Sbjct:    5 PLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGVV 94
The following BLAST results are available for this feature:
BLAST of FC873355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CH103_RHIME6.246e-1136.3610 kDa chaperonin 3 OS=Rhizobium meliloti GN=groS3... [more]
CH101_BRAJA8.157e-1136.6710 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BG04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873355 ID=FC873355; Name=FC873355; organism=Citrus clementina; type=EST; length=599bp
AAGTTTTGGTGAAGTCCCCTCCTGTTTGTTCGTGAAGAGAAAATGGCAAA
GAGATTGATTCCAGCATTCAGTCGCGTTTTGGTTGAAAAAATAATCCCTC
CTTCCAAAACCAACTCCGGAATCTTACTTCCTGAGAAAACAAGCAAGCTG
ATTTCTGGAAAAGTTGTTGCTGTGGGTCCTGGAGCTCGTGATGTCAATGG
AAAGTTTATTCCTGTAAGTGTGAAGGAAGGAGATACTGTTCTTTTGCCCG
AGTATGGGGGGGCTGAAGTTAAGCTTGGTGATAAAAAGTACCATCTGTAC
GAGGATGAGTCCATCCTGGGAACACTTCATGACCATTGAAAAATATTGCT
CTTTGATTGCATCTAGTAATGGCAGCTTTAATAATTCAAAGTTGTCGGCT
GGAGCAGCCTTGTGACTGAATATTAGTGCTATATACATTTAAACTTATTT
AGGACTTGAGAAGTGTTTTCATATAACTTGATGTACTAGTTCAGAAACTA
ATTTGCGACTGAGAATTGCTAAGAATTGCTAAGGGCTGCAGTTTATAGCG
CATTATTCGAAGTGCCCTTTGGTCAAAAAAAAAAAAAAAAAAAAAAAAA
back to top