FC873359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP_HUMAN (Sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14 Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 3 Query: 333 LGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 641 L F+MLS+G T+ F + L P + + +AQY I P+ FV+ +L A +++ C PGG SNV + KG++ LS++MTTCST A+ M PLL Sbjct: 35 LFFIMLSLGCTMEFSKIKAHLWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMKGDMNLSIVMTTCSTFCALGMMPLL 137
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP_RAT (Sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.947e-13 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 641 + + L +MLS+G T+ F + L P V V +AQ+ I P+ F++ LS A +++ C PGG SN+ T KG++ LS++MTTCS+ A+ M PLL Sbjct: 30 ILVLMLLLIMLSLGCTMEFSKIKAHLWKPKGVIVALVAQFGIMPLAAFLLGKIFHLSNIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFSALGMMPLL 137
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP_MOUSE (Sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.733e-13 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 641 + + L +MLS+G T+ F + P V + +AQY I P+ F++ L++ A +++ C PGG SN+ T KG++ LS++MTTCS+ A+ M PLL Sbjct: 30 ILVVMLLLIMLSLGCTMEFSKIKAHFWKPKGVIIAIVAQYGIMPLSAFLLGKVFHLTSIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFTALGMMPLL 137
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP4_HUMAN (Sodium/bile acid cotransporter 4 OS=Homo sapiens GN=SLC10A4 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.700e-12 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 3 Query: 345 MLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638 ML +G T+ F +R P + L Q+ + P+L F++A+ KL A ++L CCPGG SN+ + + G++ LS++MT ST+ A+V+ PL Sbjct: 117 MLGLGCTVDVNHFGAHVRRPVGALLAALCQFGLLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPL 214
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP4_RAT (Sodium/bile acid cotransporter 4 OS=Rattus norvegicus GN=Slc10a4 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.444e-12 Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 3 Query: 345 MLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG--------QLVPVDAAGLAI 695 ML +G T+ F +R P + L Q+ P+L F++A+ KL A ++L CCPGG SN+ + + G++ LS++MT ST+ A+V+ PL + + QL+P+ A L + Sbjct: 117 MLGLGCTVDVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRAWINTPLVQLLPLGAVTLTL 241
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP4_MOUSE (Sodium/bile acid cotransporter 4 OS=Mus musculus GN=Slc10a4 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.722e-12 Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = 3 Query: 345 MLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG--------QLVPVDAAGLAI 695 ML +G T+ F +R P + L Q+ P+L F++A+ KL A ++L CCPGG SN+ + + G++ LS++MT ST+ A+V+ PL + + QL+P+ A L + Sbjct: 117 MLGLGCTVDVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALIFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRAWINTPLVQLLPLGAVTLTL 241 The following BLAST results are available for this feature:
BLAST of FC873359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873359 ID=FC873359; Name=FC873359; organism=Citrus clementina; type=EST; length=809bpback to top |