FC873364

Overview
NameFC873364
Unique NameFC873364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_SCHPO (Probable eukaryotic translation initiation factor 2 subunit beta OS=Schizosaccharomyces pombe GN=tif212 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.116e-41
Identity = 107/262 (40.84%), Postives = 133/262 (50.76%), Query Frame = 2
Query:   20 PQAVSDGREDLSFDSRNSTMTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXP-------VESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            P+A S G  D     R S+  D      + EV EL     +          +  S  S     E TE ++   G E  F+ +               E  L     GDA  DL     + +           + W  SDRDY Y ELL R F +LR NNPELAG++R+  + PP V REG KKT+F N  D+ K MHR  DHV+ FL AELGTSGS+DG  RL++KGRF  K  E +LRRY+ EYV C  CKSPDTIL+KEN
Sbjct:   42 PEASSAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMKK-------KKKSKKSSASAEEQTEDITTESG-ELDFSSMKKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENMG-------EHAWLKSDRDYYYPELLNRFFTLLRTNNPELAGEKRKYTIVPPSVHREG-KKTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRFQQKQIENVLRRYIVEYVTCKTCKSPDTILTKEN 287          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_DICDI (Eukaryotic translation initiation factor 2 subunit 2 OS=Dictyostelium discoideum GN=eif2s2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.045e-39
Identity = 70/140 (50.00%), Postives = 105/140 (75.00%), Query Frame = 2
Query:  365 ADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            +DG    +   PW G+DRDY+Y EL  R++++L+ NNP+L  D++RT M+PPQV+REGTKKT++ NF ++C T++R+ +HV  ++ AELGT+GS+DG QRLV++GRF     E ++R Y++EYV C  CKSP+T+L + N
Sbjct:  144 SDGDTFVQGTIPWAGTDRDYKYSELTYRIYHLLQANNPDLISDQKRT-MKPPQVMREGTKKTIWANFAEICGTLNRKVEHVYNYVFAELGTNGSIDGNQRLVIRGRFKTSQIEIVIRHYISEYVACRNCKSPNTVLERNN 282          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_CAEEL (Eukaryotic translation initiation factor 2 subunit 2 OS=Caenorhabditis elegans GN=K04G2.1 PE=3 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 5.022e-34
Identity = 63/126 (50.00%), Postives = 94/126 (74.60%), Query Frame = 2
Query:  404 EGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            +G+  DY YEE L  V+ ++++ NP+ AGD+++  ++ P+V R G+KKT F NF+++C+ M RQ  HV+ FLLAELGT+GS+DG   L+VKGR+  K FE +LR+Y+ EYV+C  CKSP+T L+K+
Sbjct:   81 KGAWPDYTYEEALTLVYQVMKDKNPDFAGDKKKFAIKLPEVARAGSKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRWQQKQFESVLRKYIKEYVMCHTCKSPETQLTKD 206          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_YEAST (Eukaryotic translation initiation factor 2 subunit beta OS=Saccharomyces cerevisiae GN=SUI3 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.599e-32
Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 2
Query:  428 YEELLGRVFNILRENNPELAGDRRRTVMR--PPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            Y ELL R FNILR NNPELAGDR     R  PP  LR+G KKT+F N  D+ + +HR P+H++ +L AELGTSGS+DGQ+RLV+KG+F  K  E +LRRY+ EYV C  CKS +T L +E
Sbjct:  131 YSELLSRFFNILRTNNPELAGDRSGPKFRIPPPVCLRDG-KKTIFSNIQDIAEKLHRSPEHLIQYLFAELGTSGSVDGQKRLVIKGKFQSKQMENVLRRYILEYVTCKTCKSINTELKRE 249          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METKA (Translation initiation factor 2 subunit beta OS=Methanopyrus kandleri GN=eif2b PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  419 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            +Y+YEELL R +    E  PE   + RR  M  P+V  EG K TV  NF ++ K + R P+H+  + L ELGT+G +DG  RL++ G + PK  E  L+ YV E+V+C  C  PDT L +E+
Sbjct:    3 EYDYEELLERAY----EQLPEEVLEDRRFEMPKPKVSVEG-KTTVIRNFKEISKKLDRDPEHITKYFLKELGTAGHVDG-GRLILHGVYHPKLVEEELKNYVEEFVLCPECGKPDTKLVRED 118          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_THEGJ (Translation initiation factor 2 subunit beta OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.516e-17
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            Y++E LL + +    E  PE     +     PP V+     +T+  NF+D+ + M+R P H++ F+L E+ T+G+L+G +R++++GRF P      L++Y+ EYVIC  C SPDT + K +
Sbjct:    8 YDFERLLDKAY----EELPENVKSHKSRFEVPPAVVTIAGNRTIIENFVDIAEAMNRDPSHLLKFILREVATAGTLEG-RRVILQGRFTPYLIANKLKKYLKEYVICPVCGSPDTKIIKRD 123          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_PYRHO (Translation initiation factor 2 subunit beta OS=Pyrococcus horikoshii GN=eif2b PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+ + ++R P H++ FLL E+ T+G+L+G +R+V++GRF P      L++Y+ EYVIC  C SPDT + K +
Sbjct:    6 YDYEKLLEKAYEELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIAEALNRDPQHLLKFLLREIATAGTLEG-KRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRD 121          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_PYRFU (Translation initiation factor 2 subunit beta OS=Pyrococcus furiosus GN=eif2b PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+   ++R P H++ FLL E+ T+G+L+G +R+V++GRF P      L++Y+ EYVIC  C SPDT + K +
Sbjct:    6 YDYEKLLEKAYQELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIADALNRDPQHLLKFLLREIATAGTLEG-RRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRD 121          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_PYRAB (Translation initiation factor 2 subunit beta OS=Pyrococcus abyssi GN=eif2b PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+ + ++R P H++ FLL E+ T+G+L+G +R+V++GRF P      +++Y+ EYVIC  C SPDT + K +
Sbjct:    6 YDYEKLLEKAYEELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIAEALNRDPQHLLKFLLREIATAGTLEG-KRVVLQGRFTPYLIANKIKKYIKEYVICPVCGSPDTKIIKRD 121          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_HALMA (Translation initiation factor 2 subunit beta OS=Haloarcula marismortui GN=eif2B PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  425 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            EY+++L R      E  PE+ G   R  +  P + +EG   TV+ NF   C  + R+ DHVM FL  +LGTSG +D   R+ + G F     E  +  YV+E+V+C  C  PDT L +E
Sbjct:    2 EYDDMLDRAM----EETPEIDGTSERFEVPDPDIRQEGNV-TVYENFQSTCSRLGREDDHVMKFLQNDLGTSGHIDESGRVRLTGEFDATRIEASIDEYVDEFVLCSECGLPDTQLERE 115          
The following BLAST results are available for this feature:
BLAST of FC873364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
IF2B_SCHPO1.116e-4140.84Probable eukaryotic translation initiation factor ... [more]
IF2B_DICDI1.045e-3950.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_CAEEL5.022e-3450.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_YEAST3.599e-3257.50Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_METKA1.468e-1742.62Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_THEGJ9.516e-1735.54Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_PYRHO2.769e-1638.84Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_PYRFU4.723e-1638.84Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_PYRAB4.723e-1638.02Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_HALMA1.052e-1537.82Translation initiation factor 2 subunit beta OS=Ha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873364 ID=FC873364; Name=FC873364; organism=Citrus clementina; type=EST; length=786bp
TTCGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATC
TCAGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGAT
GTGAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAA
GAAGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACA
AACTGGCCGAGATAACTGAAACTTTATCAGTCTCTGAGGGGCTTGAAAGT
ACTTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCT
ATTGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGG
GTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCA
TGGGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGT
CTTTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTA
GAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACT
GTTTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGA
TCATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGG
ACGGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTT
GAAGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTG
CAAAAGTCCTGACACGATACTTTCAAAGGAAAACCG
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