FC873364

Overview
NameFC873364
Unique NameFC873364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873364_ssr146 microsatellite FC873364_ssr146:146..163. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873364_ssr269 microsatellite FC873364_ssr269:269..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14485 contig Ccv1_Contig14485:56..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METS3 (Translation initiation factor 2 subunit beta OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  425 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            EYE LL R  + L    PE+   +R  + +    ++    +T   NF D+ + ++R P HV+ FLL ELGT+G+L+G  R +++G+F        L  YV +YVIC  C  PDT + +E+
Sbjct:    3 EYENLLNRAIDQLP---PEVFEHKRFKIPKAYSDIQGN--RTFIKNFKDVAEDLNRDPQHVLKFLLRELGTAGNLEG-SRAILQGKFTHYLINERLEDYVEKYVICHECNRPDTKIIRED 116          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_SULSO (Translation initiation factor 2 subunit beta OS=Sulfolobus solfataricus GN=eif2b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  425 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  LV++G+F+ +    ++ R++  YV C  CKS DTIL KE
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTILKKE 119          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METVS (Translation initiation factor 2 subunit beta OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.057e-12
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            ++Y+ELL R     R   PE+     R  +       EG + T+  NF D+ K M R       F++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE
Sbjct:    5 FDYKELLKRA----RSQLPEVVFSDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDTHEFAKFVMKELGTAGDMEGN-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIIKE 118          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_PICTO (Translation initiation factor 2 subunit beta OS=Picrophilus torridus GN=eif2b PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  419 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSK 778
            +++Y +LL R   +L         +  R  +  P V+ EG K T+  NF+D+ + M+R P+ V+ +L  E G    L GQ RL++  + +    +  +  Y+  YVIC  CKSPDT + K
Sbjct:    2 NFDYNKLLERASGVLSSKTK----NESRLKIPEPDVIYEG-KSTIIRNFIDITEMMNRDPEDVIKYLTKEFGIGAVLSGQ-RLIINRKVSEDEIQSKMNEYMATYVICYECKSPDTEIQK 115          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METMP (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis GN=eif2b PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE
Sbjct:    5 FDYSSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKE 118          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METM7 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKE 118          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METM6 (Translation initiation factor 2 subunit beta OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.204e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 2
Query:  422 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            ++Y  LL R     RE  PE      R  +       EG + T+  NF D+ K M R P     +++ ELGT+G ++G  RL+++G+F  +     ++ YVNEYV+C  C  PDT + KE
Sbjct:    5 FDYNSLLTRA----REQLPEEVFKDVRFEIPSADSFVEGNR-TIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDMEGV-RLILQGKFGWRMVNEKIQNYVNEYVLCPECGKPDTKIVKE 118          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_HALSA (Translation initiation factor 2 subunit beta OS=Halobacterium salinarium GN=eif2b PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 42/119 (35.29%), Postives = 56/119 (47.06%), Query Frame = 2
Query:  425 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            +YEE L R      +  P++ G   R  +  P V +EG   TV+ NF      + R  DHV+ FL  E+GTS S+D   R  + G F  +     L  YV  YV C  C  PDT L  +
Sbjct:    2 DYEEQLDRAM----DEKPDVTGSETRFEVPDPNVRKEGNV-TVYENFQATLDALSRTQDHVLKFLQNEVGTSASIDESGRARLTGEFGQRRVSDTLDAYVETYVTCPECGLPDTNLETD 115          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_HALS3 (Translation initiation factor 2 subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 42/119 (35.29%), Postives = 56/119 (47.06%), Query Frame = 2
Query:  425 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            +YEE L R      +  P++ G   R  +  P V +EG   TV+ NF      + R  DHV+ FL  E+GTS S+D   R  + G F  +     L  YV  YV C  C  PDT L  +
Sbjct:    2 DYEEQLDRAM----DEKPDVTGSETRFEVPDPNVRKEGNV-TVYENFQATLDALSRTQDHVLKFLQNEVGTSASIDESGRARLTGEFGQRRVSDTLDAYVETYVTCPECGLPDTNLETD 115          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_METTH (Translation initiation factor 2 subunit beta OS=Methanobacterium thermoautotrophicum GN=eif2b PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  425 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            +YE+LL R  + L    PE+   +R  V +   V++    +T   NF ++   ++R P H++ FLL ELGT+G+L+G  R +++G+F        +  YVN++VIC  C  PDT + +E
Sbjct:    3 DYEKLLERAIDQLP---PEVFETKRFEVPKAYSVIQGN--RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG-GRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIRE 115          
The following BLAST results are available for this feature:
BLAST of FC873364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
IF2B_METS32.425e-1235.83Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_SULSO5.403e-1232.77Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_METVS7.057e-1235.00Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_PICTO9.217e-1232.50Translation initiation factor 2 subunit beta OS=Pi... [more]
IF2B_METMP1.204e-1135.00Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METM71.204e-1135.00Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METM61.204e-1135.00Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_HALSA1.572e-1135.29Translation initiation factor 2 subunit beta OS=Ha... [more]
IF2B_HALS31.572e-1135.29Translation initiation factor 2 subunit beta OS=Ha... [more]
IF2B_METTH2.053e-1134.45Translation initiation factor 2 subunit beta OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873364 ID=FC873364; Name=FC873364; organism=Citrus clementina; type=EST; length=786bp
TTCGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATC
TCAGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGAT
GTGAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAA
GAAGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACA
AACTGGCCGAGATAACTGAAACTTTATCAGTCTCTGAGGGGCTTGAAAGT
ACTTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCT
ATTGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGG
GTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCA
TGGGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGT
CTTTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTA
GAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACT
GTTTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGA
TCATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGG
ACGGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTT
GAAGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTG
CAAAAGTCCTGACACGATACTTTCAAAGGAAAACCG
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