FC873375

Overview
NameFC873375
Unique NameFC873375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 32/101 (31.68%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE--VYEFLTADRSHKQTDQI 297
            P+  +  SL+A+C    + EL ++ +++LL+ +P++ G  V +SN YA +  W +V ++R+ MK +G+ K+  CS I++  E  V+ F+  D++H + ++I
Sbjct:  714 PDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEI 814          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 201
            P+  +WG+L++AC +H E+E+ E+ A+++  LD  + G  VL+SN+YA +  W DV  +R  MK+ G
Sbjct:  566 PDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 632          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 246
            PN ++W +L+ AC+++G +EL ++  ++LL +  D  G  VLLSNIYA   +W  V ++RK   +  + K    S IE +++
Sbjct:  446 PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDD 527          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDP----DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 300
            P   +WG+L+  CR H  +EL E   K LL L+     + + ALV LSNIY   +R  +  ++R  +++RG+ K    S +E++  V +F++ D SH    QI+
Sbjct:  387 PLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIH 490          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP119_ARATH (Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 264
            PN VIW +L+ AC +HG +EL E   +++ +LD DH G  V LSNIYA    W +  ++R  +++R   +    S IE+ + + EF++
Sbjct:  342 PNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDRVRKR---RMPGKSWIELGSIINEFVS 426          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 234
            P++ +WG+L+AACR HG +ELA   AK L +L+P++ G  +LL+++YA    W+ V  ++K +K++   +    S +E
Sbjct:  455 PDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRFRRFLGSSWVE 532          
The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PP431_ARATH3.791e-1131.68Pentatricopeptide repeat-containing protein At5g55... [more]
PP148_ARATH3.791e-1140.30Pentatricopeptide repeat-containing protein At2g04... [more]
PP385_ARATH4.952e-1135.37Pentatricopeptide repeat-containing protein At5g15... [more]
PP259_ARATH4.952e-1134.62Putative pentatricopeptide repeat-containing prote... [more]
PP119_ARATH4.952e-1137.50Putative pentatricopeptide repeat-containing prote... [more]
PP436_ARATH8.446e-1137.18Pentatricopeptide repeat-containing protein At5g59... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bp
CCAAATGTTGTCATTTGGGGATCACTGATGGCAGCTTGCCGGGTTCATGG
TGAGATTGAATTAGCTGAGTTTACTGCCAAACAGCTTCTCCAGCTAGATC
CAGATCACGATGGTGCTCTTGTGCTATTATCAAACATTTATGCAAAAGAC
AAAAGGTGGCAAGATGTTGGGGAGTTAAGGAAATCAATGAAGGAAAGAGG
TATACTTAAAGAGAGAGCATGCAGTAGAATAGAAATGAACAATGAAGTGT
ACGAGTTTCTGACAGCAGATAGAAGTCATAAACAAACAGATCAGATCTAT
GAGAAGCTAAATGAGGTGATTAGTGAGTTGAAGCCGGCTGGCTATGTTCC
TGATATCCATAGTGCTCTGGTTGATTTAGAGGATGAAGAAAAGAGGGAAG
TGATTCTATGGCACAGTGAGAAGTTGGCACTTTGTTATGGGCTGATCAGT
TCCAAAAAAGATTCATGCATTCGCATAGTAAAGAATCTCAGGGTTTGTGA
GGACTGCCATAACTTTATAAAACTGGTTTCCAAGGTTTATGCGAGGGAGA
TTGTCATCCGAGATAGAACCAGGTTTCACCATTACAAAGATGGTGTGTGT
TCTTGCAAAGATTATTGGTGACCTTTTTTAAACAAATTGGAACTCATGTC
ATAACTGTGAAACATGTAAACATTCACTAAGCAAAAAAAAAAAAAAAAAA
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