FC873375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11 Identity = 32/101 (31.68%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE--VYEFLTADRSHKQTDQI 297 P+ + SL+A+C + EL ++ +++LL+ +P++ G V +SN YA + W +V ++R+ MK +G+ K+ CS I++ E V+ F+ D++H + ++I Sbjct: 714 PDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEI 814
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11 Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERG 201 P+ +WG+L++AC +H E+E+ E+ A+++ LD + G VL+SN+YA + W DV +R MK+ G Sbjct: 566 PDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 632
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11 Identity = 29/82 (35.37%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNE 246 PN ++W +L+ AC+++G +EL ++ ++LL + D G VLLSNIYA +W V ++RK + + K S IE +++ Sbjct: 446 PNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDD 527
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11 Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDP----DHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIY 300 P +WG+L+ CR H +EL E K LL L+ + + ALV LSNIY +R + ++R +++RG+ K S +E++ V +F++ D SH QI+ Sbjct: 387 PLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIH 490
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP119_ARATH (Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11 Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLT 264 PN VIW +L+ AC +HG +EL E +++ +LD DH G V LSNIYA W + ++R +++R + S IE+ + + EF++ Sbjct: 342 PNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDRVRKR---RMPGKSWIELGSIINEFVS 426
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11 Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIE 234 P++ +WG+L+AACR HG +ELA AK L +L+P++ G +LL+++YA W+ V ++K +K++ + S +E Sbjct: 455 PDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRFRRFLGSSWVE 532 The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 146
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bpback to top |