FC873378

Overview
NameFC873378
Unique NameFC873378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_LEIBR (Probable citrate synthase, mitochondrial OS=Leishmania braziliensis GN=LbrM18_V2.0760 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.526e-72
Identity = 149/284 (52.46%), Postives = 180/284 (63.38%), Query Frame = 3
Query:    3 GIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRA--TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP--KDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDE--------CGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQR 815
            GIRFR  +IPECQ++LP A                TG+VP+ EQ   L+ EL  RA         KAI ALP + HPMT F+ GV+ALQ  S+F  AY  G  +K+ YWE   EDSL+++AR P VAA +Y R+ K    +    +  LD+  NFS+MLGF D +  E MRLY++IH DHEGGNVSAHT  LVASALSDPYL+F+A LNGLAGPLHGLANQEVL ++ S+ D         C E      L  Y W+ LNSGQVVPG+GH VLRK DPRYTC R
Sbjct:   82 GIRFRNRTIPECQEVLPKAPNGCETLPEAMFWLLMTGEVPTAEQARALNAELHRRADPVAIAAAQKAIAALPASTHPMTAFSVGVLALQTYSKFAAAYATGKSNKTTYWEYALEDSLDMLARTPAVAAMIYNRVTKGRAEVAASSNSELDWAANFSNMLGFKDNEFWECMRLYLSIHVDHEGGNVSAHTTTLVASALSDPYLAFSAGLNGLAGPLHGLANQEVLKYLLSMQDRVKADGVNVCDEAALEVALTKYTWELLNSGQVVPGYGHAVLRKVDPRYTCLR 365          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_TETTH (Citrate synthase, mitochondrial OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.361e-69
Identity = 132/274 (48.18%), Postives = 181/274 (66.06%), Query Frame = 3
Query:    3 GIRFRGLSIPECQKLLPAAKP------DXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRY 803
            GI FRG +IP+ ++ LP A P      +             TG++P+  QVD L  E ++R TV       I  LP   H MT  +  ++ LQ  S+F + Y++G I K  YWEP YEDS++LIA++P VAA +Y+  Y+D K+I  D  LD+ GN++HM+GF+   + E +R Y++IH DHEGGNVSAHT HLV SALSDPYLS++A +NGLAGPLHGLANQEVL W+   ++E G  V+ + ++DYV   ++SG+VVPG+GH VLR TDPR+
Sbjct:   83 GIIFRGYTIPQLKEFLPKADPKAADQANQEPLPEGIFWLLMTGQLPTHAQVDALKHEWQNRGTVNQDCVNFILNLPKDLHSMTMLSMALLYLQKDSKFAKLYDEGKISKKDYWEPFYEDSMDLIAKIPRVAAIIYRHKYRDSKLIDSDSKLDWAGNYAHMMGFEQHVVKECIRGYLSIHCDHEGGNVSAHTTHLVGSALSDPYLSYSAGVNGLAGPLHGLANQEVLKWLLQFIEEKGTKVSDKDIEDYVDHVISSGRVVPGYGHAVLRDTDPRF 356          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: PRPC_EMENI (2-methylcitrate synthase, mitochondrial OS=Emericella nidulans GN=mcsA PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.468e-65
Identity = 127/271 (46.86%), Postives = 176/271 (64.94%), Query Frame = 3
Query:    3 GIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK-DDSLDYGGNFSHMLG---FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRY 803
            GIRF G +I +CQK LP                  TG+VPS  QV   SK+L + + +PD++     + P   HPMTQ +    AL  +S+F + YEKGI+K+ YWEPT++D+++L+A++P VAA V++    D     K D + D+  NF+ +LG    ++    +L+RLY+ +H DHEGGNVSAH  HLV SALSDP+LS++A L GLAGPLHGLA QEVL WI ++ ++ G   T E ++ Y+W TL SG+VVPG+GHGVLRK DPR+
Sbjct:   86 GIRFHGKTIKDCQKELPKGPTGTEMLPEAMFWLLLTGEVPSTSQVRAFSKQLAEESHLPDHILDLAKSFPKHMHPMTQISIITAALNTESKFAKLYEKGINKADYWEPTFDDAISLLAKIPRVAALVFRPNEIDVVGRQKLDPAQDWSYNFAELLGKGGANNADFHDLLRLYLALHGDHEGGNVSAHATHLVGSALSDPFLSYSAGLLGLAGPLHGLAAQEVLRWILAMQEKIGTKFTDEDVRAYLWDTLKSGRVVPGYGHGVLRKPDPRF 356          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY3_YEAST (Citrate synthase 3 OS=Saccharomyces cerevisiae GN=CIT3 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.844e-56
Identity = 123/291 (42.27%), Postives = 167/291 (57.39%), Query Frame = 3
Query:    3 GIRFRGLSIPECQKLLPAAKPDXXXXXXXXXXXXX-TGKVPSKEQVDGLSKELRDRAT-VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG-IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPK-DDSLDYGGNFSHMLGFDDPK---------------MLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            GI+F+GL+I ECQ  LP    D              TG VP+ +Q     KEL  R   +P Y  K + +LP   HPMTQ A G+ ++   S F   Y+KG I K ++W+ T EDSLNLIA +P++   +Y  I  +G  + +  + +D+  N   +LG  +                  + LMRLY  IH DHEGGNVSAHT HLV SALSDPYLS+++ + GLAGPLHGLA QEV+ ++  +          +++KDY+WK LNS +V+PG+GH VLRK DPR+T   E
Sbjct:   86 GIKFQGLTIEECQNRLPNTGIDGDNFLPESMLWLLMTGGVPTFQQAASFRKELAIRGRKLPHYTEKVLSSLPKDMHPMTQLAIGLASMNKGSLFATNYQKGLIGKMEFWKDTLEDSLNLIASLPLLTGRIYSNITNEGHPLGQYSEEVDWCTNICSLLGMTNGTNSSNTCNLTSQQSLDFINLMRLYTGIHVDHEGGNVSAHTTHLVGSALSDPYLSYSSGIMGLAGPLHGLAAQEVVRFLIEMNSNISSIAREQEIKDYLWKILNSNRVIPGYGHAVLRKPDPRFTAMLE 376          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_SYNY3 (Citrate synthase OS=Synechocystis sp. (strain PCC 6803) GN=gltA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.631e-22
Identity = 71/232 (30.60%), Postives = 118/232 (50.86%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            GK+P++ +++    E+R    +  ++   +   P T HPM    +   AL +         + +   KY        + L+A++P + A  +  I +    I  +D LDY  NF +ML     DP   ++  + +T+H++H   N S  +  + AS L+DPY   A+A+  LAGPLHG AN+EVL    ++++E G   + E ++ YV K L + Q + GFGH V +  DPR
Sbjct:   61 GKLPTQAEIEEFEYEIRTHRRIKYHIRDMMKCFPETGHPMDALQTSAAALGLFYA-----RRALDDPKYIRAAV---VRLLAKIPTMVA-AFHMIREGNDPIQPNDKLDYASNFLYMLTEKEPDPFAAKVFDVCLTLHAEHTM-NASTFSARVTASTLTDPYAVVASAVGTLAGPLHGGANEEVL----NMLEEIG---SVENVRPYVEKCLANKQRIMGFGHRVYKVKDPR 275          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_CORGL (Citrate synthase OS=Corynebacterium glutamicum GN=gltA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 72/245 (29.39%), Postives = 119/245 (48.57%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV--QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFD------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G++P+ +++   + E+R    + +      +  P  AHPM   AS V  L    Q +     E  + K+         ++ L+A+VP++AAY + R  K    +  D+SL+   NF  M+ G+       DP M++ +   + +H+DHE  N S  T  ++ SA ++ ++S A  +N L+GPLHG ANQ VL  ++ +    G + T    K    K    G  + GFGH V +  DPR    +E
Sbjct:  101 GELPTPDELHKFNDEIRHHTLLDEDFKSQFNVFPRDAHPMATLASSVNILSTYYQDQLNPLDEAQLDKA---------TVRLMAKVPMLAAYAH-RARKGAPYMYPDNSLNARENFLRMMFGYPTEPYEIDPIMVKALDKLLILHADHEQ-NCSTSTVRMIGSAQANMFVSIAGGINALSGPLHGGANQAVLEMLEDIKSNHGGDATEFMNK---VKNKEDGVRLMGFGHRVYKNYDPRAAIVKE 331          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_BACCO (Citrate synthase OS=Bacillus coagulans GN=ctsA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 68/239 (28.45%), Postives = 113/239 (47.28%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLE--LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGV-LRKTDPRYTCQRE 818
            G +P++ +   L + L+    VPD + + +  LP TAHPM    +GV  L   + F        H +       + +  L+ ++P + A  Y  ++ +  + P  D L Y  NF +M+    P  LE  +    + ++S+HE  N S  T  ++AS LSD Y +   A+  L G LHG AN+ V+  ++       +  T E  K  +   L+  + + GFGH V ++K DPR    +E
Sbjct:   57 GTIPNEAEKQHLEETLKQEYDVPDEIIQVLSLLPKTAHPMDALRTGVSVL---ASFDTELLNREHST-----NLKRAYQLLGKIPNIVANSYHILHSEEPVQPLQD-LSYSANFLYMITGKKPTELEEKIFDRSLVLYSEHELPN-STFTARVIASTLSDLYGALTGAVASLKGHLHGGANEAVMEMLQ-------DAQTVEGFKHLLHDKLSKKEKIMGFGHRVYMKKMDPRAAMMKE 278          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY3_ARATH (Citrate synthase 3, peroxisomal OS=Arabidopsis thaliana GN=CSY3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 68/239 (28.45%), Postives = 114/239 (47.70%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG--IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +PS+ Q+      +   + VP  V   I ++P  AHPM    S + AL +         +G  I+ SK  +   +  + +I + P +AA  Y R+     ++P  + L Y  NF +ML          +P++  ++ +   +H++HE    +A   HL +S + D Y + A A+  L GPLHG AN+ VL     ++ E G   T E + +++    N  + + GFGH V +  DPR
Sbjct:  140 GNLPSESQLSDWEFAVSQHSAVPQGVLDIIQSMPHDAHPMGVLVSAMSALSIFHPDANPALRGQDIYDSK--QVRDKQIIRIIGKAPTIAAAAYLRMAGRPPVLPSGN-LPYADNFLYMLDSLGNRSYKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGV-DVYTAVAGAVGALYGPLHGGANEAVL----KMLSEIG---TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPR 367          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY2_ARATH (Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 69/239 (28.87%), Postives = 113/239 (47.28%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKG--IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +PS+ Q+      +   + VP  V   I ++P  AHPM    S + AL +          G  I+KSK  +   +  + ++ + P +AA  Y R      ++P  + L Y  NF +ML          +P++  ++ +   +H++HE    +A   HL +S + D Y + A A+  L GPLHG AN+ VL     ++ E G   T E + D++    N  + + GFGH V +  DPR
Sbjct:  145 GNLPSQSQLADWEFTVSQHSAVPQGVLDIIQSMPHDAHPMGVLVSAMSALSIFHPDANPALSGQDIYKSK--QVRDKQIVRILGKAPTIAAAAYLRTAGRPPVLPSAN-LSYSENFLYMLDSMGNRSYKPNPRLARVLDILFILHAEHEMNCSTAAARHLASSGV-DVYTACAGAVGALYGPLHGGANEAVL----KMLAEIG---TAENIPDFIEGVKNRKRKMSGFGHRVYKNYDPR 372          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY1_MYCTU (Citrate synthase 1 OS=Mycobacterium tuberculosis GN=gltA2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 71/245 (28.98%), Postives = 123/245 (50.20%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHM-LGFD------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLN--SGQVVPGFGHGVLRKTDPRYTCQRE 818
            G++P  +Q+   +  ++    + + + +  D  P  AHPM   +S V AL     +Q+A +   +           ++ L+A++P +AAY Y++      + P D+SL    NF  +  GF       DP+++  + +   +H+DHE  N S  T  LV S+ ++ + S +  +N L GPLHG ANQ VL  ++ + D  G++V+     ++V K  N  +G  + GFGH V +  DPR    +E
Sbjct:   95 GELPDTDQLAQFTGRIQRHTMLHEDLKRFFDGFPRNAHPMPVLSSVVNALSAY--YQDALDPMDNGQ-----VELSTIRLLAKLPTIAAYAYKKSVGQPFLYP-DNSLTLVENFLRLTFGFPAEPYQADPEVVRALDMLFILHADHEQ-NCSTSTVRLVGSSRANLFTSISGGINALWGPLHGGANQAVLEMLEGIRDS-GDDVS-----EFVRKVKNREAGVKLMGFGHRVYKNYDPRARIVKE 324          
The following BLAST results are available for this feature:
BLAST of FC873378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_LEIBR6.526e-7252.46Probable citrate synthase, mitochondrial OS=Leishm... [more]
CISY_TETTH1.361e-6948.18Citrate synthase, mitochondrial OS=Tetrahymena the... [more]
PRPC_EMENI3.468e-6546.862-methylcitrate synthase, mitochondrial OS=Emerice... [more]
CISY3_YEAST3.844e-5642.27Citrate synthase 3 OS=Saccharomyces cerevisiae GN=... [more]
CISY_SYNY33.631e-2230.60Citrate synthase OS=Synechocystis sp. (strain PCC ... [more]
CISY_CORGL1.291e-1929.39Citrate synthase OS=Corynebacterium glutamicum GN=... [more]
CISY_BACCO1.865e-1828.45Citrate synthase OS=Bacillus coagulans GN=ctsA PE=... [more]
CISY3_ARATH1.865e-1828.45Citrate synthase 3, peroxisomal OS=Arabidopsis tha... [more]
CISY2_ARATH4.154e-1828.87Citrate synthase 2, peroxisomal OS=Arabidopsis tha... [more]
CISY1_MYCTU9.255e-1828.98Citrate synthase 1 OS=Mycobacterium tuberculosis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873378 ID=FC873378; Name=FC873378; organism=Citrus clementina; type=EST; length=819bp
AGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTTA
CCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGCT
TCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCCA
AGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCATT
GATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGGT
CATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGAA
TTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTTG
ATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACAA
GGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAACT
TCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAGG
CTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTCA
CACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTTG
CTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCAG
GAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACGT
AACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGGC
AGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAGA
TACACTTGTCAGAGGGAGT
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