FC873378

Overview
NameFC873378
Unique NameFC873378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12747 contig Ccv1_Contig12747:416..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CYSZ_CUCMA (Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 63/237 (26.58%), Postives = 109/237 (45.99%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +PS+ Q+      +   + VP  +   I A+P  AHPM    S + AL V         +G    K  +   +    +I + P +AA  Y R+     ++P   +L Y  NF +ML          +P++  ++ +   +H++HE    ++   HL +S + D + + + A+  L GPLHG AN+ VL     ++ E G   T   + +++    N  + + GFGH V +  DPR
Sbjct:  150 GNLPSQSQLADWEFAISQHSAVPQGLVDIIQAMPHDAHPMGVLVSAMSALSVFHPDANPALRGQDLYKSKQVRDKQIARIIGKAPTIAAAAYLRLAGRPPVLP-SSNLSYSENFLYMLDSLGNRSYKPNPRLARVLDILFILHAEHEMNCSTSAARHLASSGV-DVFTALSGAVGALYGPLHGGANEAVL----KMLSEIG---TVNNIPEFIEGVKNRKRKMSGFGHRVYKNYDPR 377          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: PRPC_SALTY (2-methylcitrate synthase OS=Salmonella typhimurium GN=prpC PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 64/233 (27.47%), Postives = 112/233 (48.07%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKML--ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRY 803
            GK+P++++++    +L+    +P  V   ++ALP  +HPM    +GV AL      +E +              + +  L+A +  +  Y Y   +   +I P+ D    GG+F H+L  + P     + M + + ++++HE  N S  T  ++A   SD Y +   A+  L GP HG AN EV L I+   +      T ++ +  + K + + +VV GFGH V    DPR+
Sbjct:   68 GKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTV--------SGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGAN-EVSLEIQQRYE------TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRH 284          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_ACIAN (Citrate synthase OS=Acinetobacter calcoaceticus subsp. anitratus GN=gltA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 70/238 (29.41%), Postives = 108/238 (45.38%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+ EQ      ++R    V D V +  +     AHPM      V AL          E   H+          ++ LIA++P +AA+ Y+       I P++D L+Y  NF HM+           +P +   M    T+H+DHE  N S  T  L  S  ++PY   +A ++ L GP HG AN+ VL     ++DE G   + E + +++ K       + GFGH V +  DPR
Sbjct:   95 GELPTAEQKVEFDAKVRAHTMVHDQVSRFFNGFRRDAHPMAIMVGVVGALSAFYHNNLDIEDINHREI-------TAIRLIAKIPTLAAWSYKYTVGQPFIYPRND-LNYAENFLHMMFATPADRDYKVNPVLARAMDRIFTLHADHEQ-NASTSTVRLAGSTGANPYACISAGISALWGPAHGGANEAVL----KMLDEIG---SVENVAEFMEKVKRKEVKLMGFGHRVYKNFDPR 316          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: PRPC_ECOLI (2-methylcitrate synthase OS=Escherichia coli (strain K12) GN=prpC PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 64/233 (27.47%), Postives = 111/233 (47.64%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKML--ELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRY 803
            GK+P+++++     +L+    +P  V   ++ALP  +HPM    +GV AL      +E +              + +  L+A +  +  Y Y   +   +I P+ D    GG+F H+L  + P     + M + + ++++HE  N S  T  ++A   SD Y +   A+  L GP HG AN EV L I+   +      T ++ +  + K + + +VV GFGH V    DPR+
Sbjct:   68 GKLPTRDELAAYKTKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTV--------SGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGEKPSQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGAN-EVSLEIQQRYE------TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRH 284          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_DEIRA (Citrate synthase OS=Deinococcus radiodurans GN=gltA PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 65/237 (27.43%), Postives = 111/237 (46.84%), Query Frame = 3
Query:  114 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDP--KMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            K+P+ E++     EL+    +PD +   I  +P   HPM    + V  L +     E       ++         S  +IA+   + A + +       + P+ D L + GNF +ML  ++P  +   L  + + +H+DH G N S  T    +S LSD Y    +A+  L GPLHG AN+ V+    +++DE G   T ++ + Y+   L++ + + G GH V +  DPR    R+
Sbjct:   55 KLPTAEELAKFDAELKANRAIPDQLVGIIRDMPKGVHPMQALRTAVSYLGLLDPQAEDITPEARRAI--------STRMIAQFSTIIAAINRAQEGQDIVAPRAD-LTHAGNFLYMLTGNEPTPEQARLFDIALVLHADH-GMNASTFTAIATSSTLSDMYSCMVSAIGALKGPLHGGANEAVM----TMLDEIG---TVDKAEAYITGKLDNKEKIMGVGHRVYKYFDPRSRVLRD 274          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_ACEAC (Citrate synthase OS=Acetobacter aceti GN=aarA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 72/259 (27.80%), Postives = 114/259 (44.02%), Query Frame = 3
Query:   51 PAAKPDXXXXXXXXXXXXXTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYED--SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            P A+ D              G++P+K Q D  +  L +   + + +    +     AHPM      V AL   + + +A +  I       P   D  ++ LIA++P +AA+ Y+    +  I P++D L+Y  NF  M+          +P +   M   + +H+DHE  N S  T  L  S  ++P+   AA +  L GP HG AN+ VL  +  +  +        Q+KD      NSG  + GFGH V +  DPR
Sbjct:   80 PIAQLDENASYEEVIYLLLNGELPNKVQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALS--AFYPDANDIAI-------PANRDLAAMRLIAKIPTIAAWAYKYTQGEAFIYPRND-LNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQ-NASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKD-----KNSGVKLMGFGHRVYKNFDPR 322          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY2_BACSU (Citrate synthase 2 OS=Bacillus subtilis GN=citZ PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 3
Query:  114 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPV-TAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYG--GNFSHMLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            ++P+K++++ L ++L   A VP  + +   +  +   HPM    + +  L +     +            E  Y  ++ L A+VP + A  + RI K   + P +   DYG   NF + L  ++P  +E+      + +H+DHE  N S  T  +  + LSD Y    AA+  L GPLHG AN+ V+     ++ E GE    E  + Y+   L   + + GFGH V +  DPR
Sbjct:   52 RLPNKKELEELKQQLAKEAAVPQEIIEHFKSYSLENVHPMAALRTAISLLGLLDSEADTMNP--------EANYRKAIRLQAKVPGLVA-AFSRIRKG--LEPVEPREDYGIAENFLYTLNGEEPSPIEVEAFNKALILHADHEL-NASTFTARVCVATLSDIYSGITAAIGALKGPLHGGANEGVM----KMLTEIGE---VENAEPYIRAKLEKKEKIMGFGHRVYKHGDPR 266          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_STRMU (Citrate synthase OS=Streptococcus mutans GN=citZ PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 3
Query:  222 HPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLY--VTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            HPM+   S V  L V +   +A E+ +      E TY+ S+ L+A++P + A   +       I P+ D L +  NF +ML    P  LE++ +   + +H++HE  N S     + AS LSD Y     A+  L GPLHG AN+ V   ++  + E G+      +  Y+ + LNS + + GFGH V +  DPR    RE
Sbjct:   90 HPMSVLRSTVSLLGVYN--LKAEERSV------EATYDQSIQLMAKIPTIIATFARLRQGLSPIAPRKD-LGFAANFLYMLNGRLPSELEILAMNRALVLHAEHEL-NASTFAARVCASTLSDIYSCVTTAIGTLKGPLHGGANERVFDMLRE-IREYGD------VDSYLQEKLNSKEKIMGFGHRVYQTQDPREKYLRE 273          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_HELPJ (Citrate synthase OS=Helicobacter pylori J99 GN=gltA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 76/249 (30.52%), Postives = 115/249 (46.18%), Query Frame = 3
Query:  108 TGKVPSKEQVDGLS--KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYED-SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFD--------------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            TG++P K Q + L    ELR R+ V + +     A P  AHPM + +SGV  L              H++ + E  Y+  +  ++A++P +AA  Y R      II  D +  Y  N   ML G+                P  +E     +T+H+DH G N S+ T   VAS    PY + +A ++ L G LHG AN++VLL ++ + D    +    ++KD      N    + GFGH V +  DPR
Sbjct:   91 TGELP-KNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS--------THQNMHTEEDYQTMARRIVAKIPTLAAICY-RNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVGITPLEVEAFDKILTLHADH-GQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMGFGHRVYKSYDPR 323          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_PYRFU (Citrate synthase OS=Pyrococcus furiosus GN=gltA PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.131e-15
Identity = 63/232 (27.16%), Postives = 112/232 (48.28%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFDDPKMLE-LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            GK+PS  +++   KEL     +P  V + ++ALP   HPM    + +  L       ++ +  +      E  Y   +++ A++P + A  Y RI    + +P  + L +  NF +ML G + PK  E  M + + ++++HE  N S      V S LSD Y +  A +  L GP+HG A       ++  + +  E  + E+++++ +K L   + + G GH V +  DPR
Sbjct:   57 GKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYL---GNIDDSGDIPVTP----EEVYRIGISVTAKIPTIVANWY-RIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGA-------VEEAIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPR 272          
The following BLAST results are available for this feature:
BLAST of FC873378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CYSZ_CUCMA3.517e-1726.58Citrate synthase, glyoxysomal OS=Cucurbita maxima ... [more]
PRPC_SALTY4.593e-1727.472-methylcitrate synthase OS=Salmonella typhimurium... [more]
CISY_ACIAN5.999e-1729.41Citrate synthase OS=Acinetobacter calcoaceticus su... [more]
PRPC_ECOLI1.023e-1627.472-methylcitrate synthase OS=Escherichia coli (stra... [more]
CISY_DEIRA1.336e-1627.43Citrate synthase OS=Deinococcus radiodurans GN=glt... [more]
CISY_ACEAC1.336e-1627.80Citrate synthase OS=Acetobacter aceti GN=aarA PE=1... [more]
CISY2_BACSU2.977e-1628.21Citrate synthase 2 OS=Bacillus subtilis GN=citZ PE... [more]
CISY_STRMU3.888e-1632.34Citrate synthase OS=Streptococcus mutans GN=citZ P... [more]
CISY_HELPJ8.663e-1630.52Citrate synthase OS=Helicobacter pylori J99 GN=glt... [more]
CISY_PYRFU1.131e-1527.16Citrate synthase OS=Pyrococcus furiosus GN=gltA PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873378 ID=FC873378; Name=FC873378; organism=Citrus clementina; type=EST; length=819bp
AGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTTA
CCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGCT
TCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCCA
AGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCATT
GATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGGT
CATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGAA
TTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTTG
ATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACAA
GGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAACT
TCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAGG
CTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTCA
CACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTTG
CTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCAG
GAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACGT
AACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGGC
AGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAGA
TACACTTGTCAGAGGGAGT
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