FC873378

Overview
NameFC873378
Unique NameFC873378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY3_BACSU (2-methylcitrate synthase OS=Bacillus subtilis GN=mmgD PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 64/239 (26.78%), Postives = 113/239 (47.28%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLE--LMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGV-LRKTDPRYTCQRE 818
            G++P + +++ L +++   +++P    + ++ LP   HPM    +G+ AL         Y++ I   +      E +  L+ ++P + A  Y+ I K   I+P   +L Y  NF +M+    P  LE  +    + ++S+HE  N S     ++AS  SD Y +   A+  L G LHG AN+ V+  +        E  TT   +  +   L   + + GFGH V ++K DPR    +E
Sbjct:   57 GRLPEESEMETLERKINSASSLPADHLRLLELLPEDTHPMDGLRTGLSALA-------GYDRQID-DRSPSANKERAYQLLGKMPALTAASYRIINKKEPILPLQ-TLSYSANFLYMMTGKLPSSLEEQIFDRSLVLYSEHEMPN-STFAARVIASTHSDLYGALTGAVASLKGNLHGGANEAVMYLLL-------EAKTTSDFEQLLQTKLKRKEKIMGFGHRVYMKKMDPRALMMKE 278          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_THIFE (Citrate synthase OS=Thiobacillus ferrooxidans GN=gltA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 67/237 (28.27%), Postives = 113/237 (47.68%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV---QSEFQEAYEKG--IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +P    ++     LR    V   V + +  +PVT HPM      V +L +   Q E  +A E+G  +H           ++ +IAR+P + A   Q  + +  I P+ D L +  NF +ML     DP   +++   + +H++H   N S  +  +  S L++PY     A+  LAGPLHG ANQ+       VV+   E  + +Q+  Y+ + + + + + GFGH + +  DPR
Sbjct:   56 GVLPGAADLERFDHGLRAHRQVKYNVREIMKFMPVTGHPMDMLHCAVASLGMFYPQQELSDA-ERGNTLHLDAM-------AMRIIARMPTIVAMWEQMRFGNDPISPRPD-LSHAANFLYMLSGREPDPAHTKILDSCLILHAEHTI-NASTFSVLVTGSTLTNPYHVIGGAIGTLAGPLHGGANQK-------VVEMLEEISSVQQVGAYLDRKMANKEKIWGFGHRIYKTRDPR 275          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_HELPY (Citrate synthase OS=Helicobacter pylori GN=gltA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 75/249 (30.12%), Postives = 114/249 (45.78%), Query Frame = 3
Query:  108 TGKVPSKEQVDGLS--KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYED-SLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-GFD--------------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            TG++P K Q + L    ELR R+ V + +     A P  AHPM + +SGV  L              H++ + E  Y+  +  ++A++P +AA  Y R      II  D +  Y  N   ML G+                P  +E     +T+H+DH   N S+ T   VAS    PY + +A ++ L G LHG AN++VLL ++ + D    +    ++KD      N    + GFGH V +  DPR
Sbjct:   91 TGELP-KNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYS--------THQNMHTEEDYQTMARRIVAKIPTLAAICY-RNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHSQ-NASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKD-----KNDNFKLMGFGHRVYKSYDPR 323          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISYC_DICDI (Citrate synthase OS=Dictyostelium discoideum GN=gltA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 64/241 (26.56%), Postives = 106/241 (43.98%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ----RIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +PSKEQ +  + ++ +   + + +   + +    AHPM    S + A+            G+   K  +   +    ++ ++P +AA  Y+    R Y D       ++L Y  NF +ML           P +   +     IH+DHE  N S  T   +AS L DPY + A +   L GPLHG AN+ VL  ++++        T E +  ++ +     Q + GFGH V +  DPR
Sbjct:  109 GDLPSKEQSNLWNTKIMNHTFIHENLISMMKSFRYDAHPMGMLISSLSAMSTFYPEANPALAGVDIYKNKQLMNKQIFRILGKLPTIAACAYRHRIGRPYND-----PSNTLSYTENFLYMLDRLSESNYKPHPVLTRALDKLFIIHADHEL-NCSTATMRQIASTLVDPYTACAGSAGALYGPLHGGANEAVLRMLEAI-------GTIENIPKFIEQVKQKKQRLMGFGHRVYKSYDPR 336          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICJA (Citrate synthase (Fragment) OS=Rickettsia japonica GN=gltA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 65/246 (26.42%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V D ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNDRLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPYTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICCN (Citrate synthase OS=Rickettsia conorii GN=gltA PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 65/246 (26.42%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  IK +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMIKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 326          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICSL (Citrate synthase (Fragment) OS=Rickettsia slovaca GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICSI (Citrate synthase (Fragment) OS=Rickettsia sibirica GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICPA (Citrate synthase (Fragment) OS=Rickettsia parkeri GN=gltA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICAE (Citrate synthase OS=Rickettsia africae (strain ESF-5) GN=gltA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 326          
The following BLAST results are available for this feature:
BLAST of FC873378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY3_BACSU2.520e-1526.782-methylcitrate synthase OS=Bacillus subtilis GN=m... [more]
CISY_THIFE3.292e-1528.27Citrate synthase OS=Thiobacillus ferrooxidans GN=g... [more]
CISY_HELPY4.299e-1530.12Citrate synthase OS=Helicobacter pylori GN=gltA PE... [more]
CISYC_DICDI7.333e-1526.56Citrate synthase OS=Dictyostelium discoideum GN=gl... [more]
CISY_RICJA9.578e-1526.42Citrate synthase (Fragment) OS=Rickettsia japonica... [more]
CISY_RICCN1.634e-1426.42Citrate synthase OS=Rickettsia conorii GN=gltA PE=... [more]
CISY_RICSL2.787e-1426.02Citrate synthase (Fragment) OS=Rickettsia slovaca ... [more]
CISY_RICSI2.787e-1426.02Citrate synthase (Fragment) OS=Rickettsia sibirica... [more]
CISY_RICPA2.787e-1426.02Citrate synthase (Fragment) OS=Rickettsia parkeri ... [more]
CISY_RICAE2.787e-1426.02Citrate synthase OS=Rickettsia africae (strain ESF... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873378 ID=FC873378; Name=FC873378; organism=Citrus clementina; type=EST; length=819bp
AGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTTA
CCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGCT
TCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCCA
AGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCATT
GATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGGT
CATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGAA
TTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTTG
ATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACAA
GGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAACT
TCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAGG
CTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTCA
CACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTTG
CTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCAG
GAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACGT
AACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGGC
AGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAGA
TACACTTGTCAGAGGGAGT
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