FC873378

Overview
NameFC873378
Unique NameFC873378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12747 contig Ccv1_Contig12747:416..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICHE (Citrate synthase (Fragment) OS=Rickettsia helvetica GN=gltA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 63/246 (25.61%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  Y+  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSSEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNCK--EADYKLTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYIAKAKDKNDPFRLIGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICFE (Citrate synthase OS=Rickettsia felis GN=gltA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSIEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACVSTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 326          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICRH (Citrate synthase (Fragment) OS=Rickettsia rhipicephali GN=gltA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 63/246 (25.61%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH + +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEVVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRIYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICMA (Citrate synthase (Fragment) OS=Rickettsia massiliae GN=gltA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 63/246 (25.61%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH + +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEVVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRIYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICCA (Citrate synthase (Fragment) OS=Rickettsia canadensis GN=gltA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 64/246 (26.02%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSSEQYNNFTKKVAVHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTMAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCMKYEVNPVIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYIAKAKDKDDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_PSEAE (Citrate synthase OS=Pseudomonas aeruginosa GN=gltA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 65/238 (27.31%), Postives = 112/238 (47.06%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+  Q +     +++   V + +    +     AHPM      + AL   + + ++ +  I+  K+ E +      LIA++P +AA VY+    +  + P++D L+Y  NF HM+ F+         P + + M     +H+DHE  N S  T  L  S+ ++P+   A+ +  L GP HG AN+ VL  +  + D    +   E+ KD      N    + GFGH V +  DPR
Sbjct:   93 GELPTAAQKEQFVGTIKNHTMVHEQLKTFFNGFRRDAHPMAVMCGVIGALS--AFYHDSLD--INNPKHREVSAH---RLIAKMPTIAAMVYKYSKGEPMMYPRND-LNYAENFLHMM-FNTPCETKPISPVLAKAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIASGIAALWGPAHGGANEAVLRMLDEIGDVSNIDKFVEKAKD-----KNDPFKLMGFGHRVYKNFDPR 315          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_COXBU (Citrate synthase OS=Coxiella burnetii GN=gltA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 63/237 (26.58%), Postives = 108/237 (45.57%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHML-------GFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+K + +   + +++  +V + V K  +     AHPM    S + AL         Y   +  +K  +     ++ LIA++P +AA  Y+       + P+  +++Y  NF HML          DP +   M     +H+DHE  N S  T  +  S  ++P+   +A ++ L GP HG AN+  L  ++ + DE       ++ KD      N    + GFGH V +  DPR
Sbjct:   92 GELPNKGEKEKFVRTIKEHTSVYEQVTKFFNGFHYDAHPMAMVLSTIGALSA------FYHDALDITKPADRELS-AIRLIAKMPTLAAMSYKYSIGQPFMHPRR-AMNYAENFLHMLFGTPYEETEPDPVLARAMDRIFILHADHEQ-NASTTTVRVAGSTGANPFACISAGISALWGPAHGGANEACLNMLRKIGDEKNIGQYIKKAKD-----KNDPFRLMGFGHRVYKNYDPR 314          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICTY (Citrate synthase OS=Rickettsia typhi GN=gltA PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 64/246 (26.02%), Postives = 112/246 (45.53%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ    + ++   A V + ++        ++HPM    + V +L        A+   +    + E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  YV K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSSEQYHNFTTKIAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDL--LNFNETDYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYVAKAKDKNDPFRLMGFGHRVYKSYDPRAAVLKE 326          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_ASTRI (Citrate synthase (Fragment) OS=Astrakhan rickettsia GN=gltA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+ LD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR    +E
Sbjct:   92 GELPSGEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNPLDFTENFLHMMFATPCTKYTVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSEYIPKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICBR (Citrate synthase OS=Rickettsia bellii (strain RML369-C) GN=gltA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKT--LNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G++P+ +Q +  +K++   A V + ++        ++HPM    + V +L         Y   ++  K  E  YE  ++ +IA++P +AA  Y+       + P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        + E +  Y+ K    N    + GFGH V +  DPR    +E
Sbjct:   98 GELPNNKQYNDFTKKVAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLSA------FYPDLLNFFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFVYP-DNSLDFTENFLHMMFATPCEKYKVNPVIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACVSTGIASLWGPAHGGANEAVINMLKEI-------GSVENIPKYIAKAKDKNDNFRLMGFGHRVYKNYDPRAAVLKE 326          
The following BLAST results are available for this feature:
BLAST of FC873378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_RICHE3.639e-1425.61Citrate synthase (Fragment) OS=Rickettsia helvetic... [more]
CISY_RICFE3.639e-1426.02Citrate synthase OS=Rickettsia felis GN=gltA PE=3 ... [more]
CISY_RICRH4.753e-1425.61Citrate synthase (Fragment) OS=Rickettsia rhipicep... [more]
CISY_RICMA4.753e-1425.61Citrate synthase (Fragment) OS=Rickettsia massilia... [more]
CISY_RICCA4.753e-1426.02Citrate synthase (Fragment) OS=Rickettsia canadens... [more]
CISY_PSEAE6.208e-1427.31Citrate synthase OS=Pseudomonas aeruginosa GN=gltA... [more]
CISY_COXBU6.208e-1426.58Citrate synthase OS=Coxiella burnetii GN=gltA PE=3... [more]
CISY_RICTY8.108e-1426.02Citrate synthase OS=Rickettsia typhi GN=gltA PE=3 ... [more]
CISY_ASTRI1.059e-1325.61Citrate synthase (Fragment) OS=Astrakhan rickettsi... [more]
CISY_RICBR1.383e-1325.61Citrate synthase OS=Rickettsia bellii (strain RML3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873378 ID=FC873378; Name=FC873378; organism=Citrus clementina; type=EST; length=819bp
AGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTTA
CCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGCT
TCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCCA
AGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCATT
GATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGGT
CATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGAA
TTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTTG
ATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACAA
GGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAACT
TCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAGG
CTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTCA
CACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTTG
CTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCAG
GAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACGT
AACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGGC
AGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAGA
TACACTTGTCAGAGGGAGT
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