FC873378

Overview
NameFC873378
Unique NameFC873378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICBE (Citrate synthase (Fragment) OS=Rickettsia bellii GN=gltA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKT--LNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G++P+ +Q +  +K++   A V + ++        ++HPM    + V +L         Y   ++  K  E  YE  ++ +IA++P +AA  Y+       + P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        + E +  Y+ K    N    + GFGH V +  DPR    +E
Sbjct:   92 GELPNNKQYNDFTKKVAHHALVNERLHYLFQTFCSSSHPMAIMLAAVGSLSA------FYPDLLNFFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFVYP-DNSLDFTENFLHMMFATPCEKYKVNPVIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACVSTGIASLWGPAHGGANEAVINMLKEI-------GSVENIPKYIAKAKDKNDNFRLMGFGHRVYKNYDPRAAVLKE 320          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_ABDS2 (Citrate synthase OS=Antarctic bacterium DS2-3R GN=gltA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 60/233 (25.75%), Postives = 103/233 (44.21%), Query Frame = 3
Query:  114 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDD--PKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVW--KTLNSGQVVPGFGHGVLRKTDPR 800
            ++P+  ++       R    + + V  AID L    HPM    + V  L       +            E   E +++L+A  P V AY  +R   +  I P++D LDY  NF  M   ++  P+++E   + + ++++H   N S  T  ++ S L+D + +   A+  L GPLHG AN+ V+   + +     E++     +   W    L   + V GFGH V +  D R
Sbjct:   57 ELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGANHARAQDSSP--------EANLEKAMSLLATFPSVVAYDQRRRRGEELIEPRED-LDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSF-NASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSR 279          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICPR (Citrate synthase OS=Rickettsia prowazekii GN=gltA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 63/246 (25.61%), Postives = 113/246 (45.93%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS +Q    +K++   + V + ++        ++HPM    + V +L        A+   +    + E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++P+   +  +  L GP HG AN+ V+  +K +        ++E +  YV K  +      + GFGH V +  DPR    +E
Sbjct:   99 GELPSSDQYCNFTKKVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAVGSLS-------AFYPDL--LNFNETDYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANPFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYVAKAKDKNDPFRLMGFGHRVYKSYDPRAAVLKE 326          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICAK (Citrate synthase (Fragment) OS=Rickettsia akari GN=gltA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 61/246 (24.80%), Postives = 114/246 (46.34%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPRYTCQRE 818
            G++PS EQ +  +K++   + V + ++        ++HPM    + + +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       + P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++ +   +  +  L GP HG AN+ V+  +K +        ++E +  Y+ K  +      + GFGH V +  DPR +  +E
Sbjct:   92 GELPSIEQYNNFTKQVAHHSLVNERLHYLFQTFCSSSHPMAIMLAAIGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFVYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANAFACISTGIASLWGPAHGGANEAVINMLKEI-------GSSENIPKYIAKAKDKSDPFRLMGFGHRVYKNYDPRASVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_BACSU (Citrate synthase 1 OS=Bacillus subtilis GN=citA PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 65/240 (27.08%), Postives = 108/240 (45.00%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGG--NFSHMLGFDDPKMLELMRL--YVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            GK+PS E++     +L     +P+++ + I +LP     M+   + V AL                +  + P  E+++ LIA  P + AY  +    +  I P   S  YG   N+ +ML  + P   +   L  Y+ + ++H G N S  +  +  S  SD   +  AAL  + GPLHG A   V      ++++ GE    E  + Y+ + L  G+ + GFGH V +  DPR    R+
Sbjct:   52 GKLPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALG-------------ENTYTFHPKTEEAIRLIAITPSIIAYRKRWTRGEQAIAP---SSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEH-GMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAV----TKMLEDIGEK---EHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQ 267          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RHIME (Citrate synthase OS=Rhizobium meliloti GN=gltA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 64/243 (26.34%), Postives = 106/243 (43.62%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV----QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG-------FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQV--VPGFGHGVLRKTDPR 800
            G++P+K Q       +     V + + +        AHPM      V AL       ++  + +++ +            SL +IA++P +AA  Y+       + PK+D LDY  NF  M           +P +   M     +H+DHE  N S  T  L  S+ ++P+   AA +  L GP HG AN+  L    +++ E G   T +++ +Y+ K  +      + GFGH V +  DPR
Sbjct:   93 GELPTKAQKADFDYRVTHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVA-----------SLRMIAKMPTIAAMAYKYHIGQPFVYPKND-LDYASNFLRMCFAVPCEEYVVNPVLARAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAAL----NMLAEIG---TVDRIPEYITKAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY1_ARATH (Citrate synthase 1, peroxisomal OS=Arabidopsis thaliana GN=CSY1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 56/240 (23.33%), Postives = 108/240 (45.00%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV--QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI-IPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +PS+ Q+      +   + VP  V   I ++P   HP+    + + AL +            G++KSK  +   +  + ++ + P +AA  Y R  K GK  +    +L Y  NF +M+          +P++  ++ +   + ++HE    +A   HL +S   D Y + +  +  + GPLHG A       +++ ++   E  T E + +++    N  + + GFGH + +  DPR
Sbjct:  142 GNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSK--QVRDKQIVRVLGQAPTIAAAAYLR--KAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSG-GDVYTAVSGGVGAIYGPLHGGA-------VEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPR 369          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_RICAU (Citrate synthase (Fragment) OS=Rickettsia australis GN=gltA PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 64/244 (26.23%), Postives = 111/244 (45.49%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYE-DSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G++P+ EQ +  + ++   + V + ++    A   ++HPM    + V +L        A+   +   K  E  YE  ++ +IA++P +AA  Y+       I P D+SLD+  NF HM+          +P +   +     +H+DHE  N S  T  +  S+ ++ +   +  +  L GP HG AN+ V+  +K +     EN+     K    K  N    + GFGH V +  DPR    +E
Sbjct:   92 GELPTIEQYNNFTTQVAHHSLVNERLHYLFQAFCSSSHPMAIMLAAVGSLS-------AFYPDLLNFK--EADYELTAIRMIAKIPTIAAMSYKYSIGQPFIYP-DNSLDFTENFLHMMFATPCTKYKVNPIIKNALNKIFILHADHEQ-NASTSTVRIAGSSGANAFACISTGIASLWGPAHGGANEAVINMLKEI--GSSENIPKFIAKA---KDKNDPFRLMGFGHRVYKNYDPRAAVLKE 319          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_ECOLI (Citrate synthase OS=Escherichia coli (strain K12) GN=gltA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 60/245 (24.49%), Postives = 111/245 (45.31%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G+ P++EQ D     +     + + + +   A    +HPM        AL   + + ++ +  ++  ++ E     +  L++++P +AA  Y+       + P++D L Y GNF +M+          +P +   M   + +H+DHE  N S  T     S+ ++P+   AA +  L GP HG AN+  L  ++ +        + + + ++V   K  N    + GFGH V +  DPR T  RE
Sbjct:   93 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI-------SSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 321          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_ECOL6 (Citrate synthase OS=Escherichia coli O6 GN=gltA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 60/245 (24.49%), Postives = 111/245 (45.31%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G+ P++EQ D     +     + + + +   A    +HPM        AL   + + ++ +  ++  ++ E     +  L++++P +AA  Y+       + P++D L Y GNF +M+          +P +   M   + +H+DHE  N S  T     S+ ++P+   AA +  L GP HG AN+  L  ++ +        + + + ++V   K  N    + GFGH V +  DPR T  RE
Sbjct:   93 GEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI-------SSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 321          
The following BLAST results are available for this feature:
BLAST of FC873378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_RICBE1.383e-1325.61Citrate synthase (Fragment) OS=Rickettsia bellii G... [more]
CISY_ABDS21.383e-1325.75Citrate synthase OS=Antarctic bacterium DS2-3R GN=... [more]
CISY_RICPR1.806e-1325.61Citrate synthase OS=Rickettsia prowazekii GN=gltA ... [more]
CISY_RICAK3.081e-1324.80Citrate synthase (Fragment) OS=Rickettsia akari GN... [more]
CISY_BACSU6.864e-1327.08Citrate synthase 1 OS=Bacillus subtilis GN=citA PE... [more]
CISY_RHIME1.171e-1226.34Citrate synthase OS=Rhizobium meliloti GN=gltA PE=... [more]
CISY1_ARATH1.997e-1223.33Citrate synthase 1, peroxisomal OS=Arabidopsis tha... [more]
CISY_RICAU2.608e-1226.23Citrate synthase (Fragment) OS=Rickettsia australi... [more]
CISY_ECOLI5.811e-1224.49Citrate synthase OS=Escherichia coli (strain K12) ... [more]
CISY_ECOL65.811e-1224.49Citrate synthase OS=Escherichia coli O6 GN=gltA PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873378 ID=FC873378; Name=FC873378; organism=Citrus clementina; type=EST; length=819bp
AGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTTA
CCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGCT
TCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCCA
AGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCATT
GATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGGT
CATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGAA
TTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTTG
ATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACAA
GGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAACT
TCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAGG
CTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTCA
CACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTTG
CTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCAG
GAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACGT
AACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGGC
AGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAGA
TACACTTGTCAGAGGGAGT
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