FC873378

Overview
NameFC873378
Unique NameFC873378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_SULSO (Citrate synthase OS=Sulfolobus solfataricus GN=gltA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 68/233 (29.18%), Postives = 104/233 (44.64%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYW-EPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFDDPKMLEL--MRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            GK+P+K++++ L  +L +   VP  V   I  +P  A  +     G  AL             I K+  W E   E ++++IA++  + A VY+R   +   IP + S  +  +F       +P   E+  M   + +++DHE    S     + AS LSD Y S  AAL  L GPLHG A +E     K  ++    N       D   K +N    + GFGH V +  DPR
Sbjct:   54 GKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALA-----------SIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIP-EPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHEVP-ASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEA---FKQFIEIGDPNRVQNWFND---KVVNQKNRLMGFGHRVYKTYDPR 267          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_SALTY (Citrate synthase OS=Salmonella typhimurium GN=gltA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 59/245 (24.08%), Postives = 111/245 (45.31%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD-------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPRYTCQRE 818
            G+ P++E+ D     +     + + + +   A    +HPM        AL   + + ++ +  ++  ++ E     +  L++++P +AA  Y+       + P++D L Y GNF +M+          +P +   M   + +H+DHE  N S  T     S+ ++P+   AA +  L GP HG AN+  L  ++ +        + + + ++V   K  N    + GFGH V +  DPR T  RE
Sbjct:   93 GEKPTQEEYDEFRTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALA--AFYHDSLD--VNNPRHREIA---AFRLLSKMPTMAAMCYKYSIGQPFVYPRND-LSYAGNFLNMMFSTPCETYEVNPVLERAMDRILILHADHEQ-NASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEI-------SSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 321          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_BARQU (Citrate synthase OS=Bartonella quintana GN=gltA PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 66/240 (27.50%), Postives = 107/240 (44.58%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+K++     + +     V +   +        +HPM   A  V  L   S F   Y   I   K  +     ++ LI++VP +AA  Y+       + P++D L Y  NF HM  F         +P +   M    T+H+DHE  N S  T  LV S+ ++P+   AA +  L GP HG AN+  L  ++ +        + E++ +++   K  N    + GFGH V +  DPR
Sbjct:   93 GELPTKQEKIDFDRCIMQHMMVHEQFTRFFHGFRRDSHPM---AVMVACLGAMSAF---YHDSID-IKDAQQRMIAAIRLISKVPTLAAMAYKYSIGQAFVYPRND-LSYAANFLHMC-FSVPCEEYKINPVLSRAMDRIFTLHADHEQ-NASTSTVRLVGSSGANPFACIAAGVACLWGPAHGGANEACLKMLQKI-------GSVERIPEFIARAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISYP_DICDI (Citrate synthase, peroxisomal OS=Dictyostelium discoideum GN=cshA PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 62/239 (25.94%), Postives = 104/239 (43.51%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV-QSEFQEAYEKG-IHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGQVVPGFGHGVLRKTDPR 800
            G +P+K Q+DG S ++     + + +   +      AHPM    S V AL     E   A   G I KS+      +    ++ ++P +AA  ++         P +  L Y  NF +ML          +P +   + +   +H+DHE    +A   H+ +S  +DPY S A A   L GP HG AN+ VL  +  +  +       E +  ++    +  + + GFGH + +  DPR
Sbjct:  128 GNLPNKSQLDGWSNKIMTHTFLHENLVGLMKTFRYDAHPMGMLISTVAALGTFYPEANPALAGGDIFKSE--NVRNKQIYRIVGKLPTIAACAWRHRIGRPYNTPVNH-LGYTENFLYMLDKLSEPDYKPNPVLCRALEILFILHADHELNCSTAAMRHISSSG-TDPYTSVAGAAGALYGPSHGGANEAVLDMLIHIGSK-------ENIPQFISDVKSKKKKLMGFGHRIYKNYDPR 355          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY2_RHITR (Citrate synthase, plasmid OS=Rhizobium tropici GN=pcsA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 64/243 (26.34%), Postives = 105/243 (43.21%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV----QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG-------FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+  Q       +     V + + +        AHPM      V AL       ++  + +++ +            SL +IA++P +AA  Y+       + PK+D LDY  NF  M           +P +   M     +H+DHE  N S  T  L  S+ ++P+   AA +  L GP HG AN+  L    +++ E G   T +++ +Y+   K  N    + GFGH V +  DPR
Sbjct:   93 GELPTAAQKKDFDYRVVHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVA-----------SLRMIAKMPTLAAMAYKYHIGQPFVYPKND-LDYASNFLRMCFAVPCEEYVVNPVLARAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANERAL----NMLTEIG---TVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY1_RHITR (Citrate synthase, chromosomal OS=Rhizobium tropici GN=ccsA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 64/243 (26.34%), Postives = 105/243 (43.21%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQV----QSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLG-------FDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+  Q       +     V + + +        AHPM      V AL       ++  + +++ +            SL +IA++P +AA  Y+       + PK+D LDY  NF  M           +P +   M     +H+DHE  N S  T  L  S+ ++P+   AA +  L GP HG AN+  L    +++ E G   T +++ +Y+   K  N    + GFGH V +  DPR
Sbjct:   93 GELPTAAQKKDFDYRVVHHTMVHEQMSRFFTGFRRDAHPMAVMCGCVGALSAFYHDSTDITDPHQRMVA-----------SLRMIAKMPTLAAMAYKYHIGQPFVYPKND-LDYASNFLRMCFAVPCEEYVVNPVLARAMDRIFILHADHEQ-NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAAL----NMLTEIG---TVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPR 315          
BLAST of FC873378 vs. ExPASy Swiss-Prot
Match: CISY_BARBA (Citrate synthase (Fragment) OS=Bartonella bacilliformis GN=gltA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 68/240 (28.33%), Postives = 108/240 (45.00%), Query Frame = 3
Query:  111 GKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGFD--------DPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYV--WKTLNSGQVVPGFGHGVLRKTDPR 800
            G++P+K+Q     + +     V +   +        +HPM   A  V  L   S F   Y   I+ +   +     S+ LI++VP +AA  Y+       + P++D L+Y  NF HM  F          P +   M    T+H+DHE  N S  T  L  S+ ++PY   AA +  L GP HG AN+  L     ++ E G   + +++ +++   K  N    + GFGH V +  DPR
Sbjct:   35 GELPNKQQKIDFDRCIMRHTMVHEQFARFFHGFRRDSHPM---AVMVACLGAMSAF---YHDSINITDPQQRMIA-SIRLISKVPTLAAMAYKYSIGQPFVYPRND-LNYATNFLHMC-FSVPCEEHKISPVIARAMDRIFTLHADHEQ-NASTSTVRLAGSSGANPYACIAAGVACLWGPAHGGANEACL----KMLQEIG---SVKKIPEFIARAKDKNDPFRLMGFGHRVYKNYDPR 257          
The following BLAST results are available for this feature:
BLAST of FC873378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CISY_SULSO7.589e-1229.18Citrate synthase OS=Sulfolobus solfataricus GN=glt... [more]
CISY_SALTY1.294e-1124.08Citrate synthase OS=Salmonella typhimurium GN=gltA... [more]
CISY_BARQU1.691e-1127.50Citrate synthase OS=Bartonella quintana GN=gltA PE... [more]
CISYP_DICDI1.691e-1125.94Citrate synthase, peroxisomal OS=Dictyostelium dis... [more]
CISY2_RHITR1.691e-1126.34Citrate synthase, plasmid OS=Rhizobium tropici GN=... [more]
CISY1_RHITR2.208e-1126.34Citrate synthase, chromosomal OS=Rhizobium tropici... [more]
CISY_BARBA2.884e-1128.33Citrate synthase (Fragment) OS=Bartonella bacillif... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873378 ID=FC873378; Name=FC873378; organism=Citrus clementina; type=EST; length=819bp
AGGGAATTCGCTTTCGGGGTCTGTCTATTCCTGAGTGCCAGAAGTTGTTA
CCTGCCGCTAAGCCAGATGGAGAACCTTTGCCTGAGGGTCTTCTTTGGCT
TCTTTTAACTGGAAAGGTACCGAGCAAAGAGCAGGTCGATGGCTTGTCCA
AGGAATTGAGAGATCGTGCCACTGTCCCAGATTATGTGTACAAGGCCATT
GATGCTCTACCTGTAACGGCACATCCAATGACTCAGTTTGCTAGTGGGGT
CATGGCTCTGCAGGTGCAAAGTGAATTTCAGGAGGCTTATGAGAAGGGAA
TTCATAAATCAAAGTACTGGGAACCAACATATGAGGATTCTCTTAATTTG
ATTGCTCGTGTGCCGGTAGTAGCTGCGTACGTTTATCAAAGGATATACAA
GGATGGAAAGATTATTCCCAAGGATGACTCACTGGATTATGGTGGGAACT
TCTCGCACATGTTGGGATTCGATGATCCTAAGATGCTAGAGCTTATGAGG
CTTTATGTTACCATTCACAGTGACCACGAAGGTGGAAATGTCAGTGCTCA
CACCGGCCATCTAGTTGCAAGTGCACTTTCAGATCCTTATCTTTCTTTTG
CTGCCGCATTAAATGGTTTAGCTGGACCACTCCATGGTTTGGCTAATCAG
GAAGTTTTGCTTTGGATCAAATCTGTGGTGGATGAGTGTGGTGAGAACGT
AACAACGGAGCAGTTGAAAGATTATGTCTGGAAAACATTGAATAGTGGGC
AGGTTGTCCCTGGATTTGGTCATGGTGTTTTGCGTAAAACTGATCCGAGA
TACACTTGTCAGAGGGAGT
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