FC873379

Overview
NameFC873379
Unique NameFC873379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD1_MOUSE (EH domain-containing protein 1 OS=Mus musculus GN=Ehd1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP + GK   +++L++NL E + K+++E  +  GDFP++   +E+L    F KF+ LKPK++  VDDML  DI  L+
Sbjct:  309 YIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISSGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394
[Close]
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD4_HUMAN (EH domain-containing protein 4 OS=Homo sapiens GN=EHD4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.466e-16
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS+L+KEMP++ GK   +++LI  L E + ++Q+E+ +  GDFP V+  +E L  Y F KF  LKPK+I+ VD+ML   I  L+
Sbjct:  312 YIISYLKKEMPSVFGKENKKRELISRLPEIYIQLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLSNKISPLM 397
[Close]
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD4_MOUSE (EH domain-containing protein 4 OS=Mus musculus GN=Ehd4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3 
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS+L+KEMP M GK   +++LI  L E + ++Q+E+ +  GDFP V+  +E L  Y F KF  LKPK+I+ VD+ML   I  L+
Sbjct:  312 YIISYLKKEMPNMFGKENKKRELIYRLPEIYVQLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLTNKISSLM 397
The following BLAST results are available for this feature:
BLAST of FC873379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
EHD1_MOUSE2.566e-1644.19EH domain-containing protein 1 OS=Mus musculus GN=... [more]
EHD4_HUMAN7.466e-1645.35EH domain-containing protein 4 OS=Homo sapiens GN=... [more]
EHD4_MOUSE1.274e-1546.51EH domain-containing protein 4 OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1BH10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873379 ID=FC873379; Name=FC873379; organism=Citrus clementina; type=EST; length=504bp
CTTATATCATCAGTCATCTTAGAAAAGAGATGCCTGCTATGATGGGCAAA
GCAAAGACTCAACAAAAACTCATTGATAATTTAGCAGAGGAATTCGGAAA
GGTCCAGAAGGAATTCCATTTACCTCCCGGAGATTTCCCTAATGTCGAGC
ACTTCAAGGAGATATTGAGTGGTTACAGTTTCGATAAATTTGAGAAGCTG
AAACCTAAGATGATACAGGTTGTTGATGATATGCTTGGTTATGACATTCC
CGACCTCCTGAAGAATTTCAGAAATCCCTATGATTAGGAGAGTGAGTGTG
GCCATAGAAGATAAATGTATCAATTGTTAACAGAAAAAGTTTATCAGCAT
CCCGCCAGAAAATTTATTTGTTTCTAGATCGTTAGAGGTGAAAATCTCGT
GTCTTTTATGCCCTTGTGCGACTCTTTGTATAATCCAGTTTTTAACTTTT
AAGGAATCCTAAATGATTCTTTAATTTTGAAAAAAAAAAAAAAAAAAAAA
AAAA
back to top