FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 6.322e-38
Identity = 78/165 (47.27%), Postives = 114/165 (69.09%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            K++L+GD+GVGK+C L++                   + + + +DG R+KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++SSF+NIR W+  I ++A  +V  +L+GNKADM  S+R + +  G+ LA EYG+ F ETSAKT +NVE  F +IA+++K R
Sbjct:   31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADM-SSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYR 194          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.402e-37
Identity = 79/176 (44.89%), Postives = 120/176 (68.18%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 671
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++ SF+NI+ W+  I+++A  +V  +L+GNK D  + +R V    G+ LA EYG+ F ETSAK+ LNV+  F +IA+++KQR   T + +EP+
Sbjct:   66 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQ-ERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQR--STKAPSEPR 238          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.402e-37
Identity = 78/171 (45.61%), Postives = 115/171 (67.25%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 656
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++ SF+NI+ W+  I+++A  +V  +L+GNK D  +  R V    G+ LA EYG+ F ETSA+T LNV+  F +IA+++KQR A   S
Sbjct:   69 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQD-RVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.990e-37
Identity = 78/163 (47.85%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            + K+LLIGDS VGK+ LLLR                  K + I +DG+   LQIWDTAGQERFRTIT+++YRGA G+L+ YDVTD+ ++NN+R W++ I+++A   V+++LVGNK D+ E ++ V TS  +  AD  GI F E SA T +NVEE F ++A +I
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDL-EDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEI 167          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.990e-37
Identity = 78/156 (50.00%), Postives = 102/156 (65.38%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 608
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILVGNK D+ E +R V    GQ LA + G +FFE SAK N+NV++VF
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF 176          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.990e-37
Identity = 80/169 (47.34%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 647
            L K ++IGD+GVGKSCLLL+                    R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +LVGNK D+   +RAV   +G+  A E+G+ F E SAKT  NVEE F   A  I +++ D
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSH-RRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQD 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.129e-37
Identity = 80/169 (47.34%), Postives = 106/169 (62.72%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 647
            L K ++IGD+GVGKSCLLL+                    R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +LVGNK D+   +RAV   +G+  A E+G+ F E SAKT  NVEE F   A  I +++ D
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSH-RRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQD 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.192e-36
Identity = 77/165 (46.67%), Postives = 113/165 (68.48%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WDTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK D    +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++KQR
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR 228          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.469e-36
Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ GNK+D+ +  RAV    GQALA++ G+ F ETSA   +N+E+ F +I  +I
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL-KHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEI 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.531e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K +LIGDSGVGKS LL+R                    R I LD K+IK QIWDTAGQER+R IT+AYYRGA+G L+VYD+T +SSF+N+  W++ + +HA  N+  +LVGNK D+    RAV T + QA A E  + F ETSA    NVEE F ++  +I
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDL-LHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB37_HUMAN6.322e-3847.27Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB26_RAT2.402e-3744.89Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB26_MOUSE2.402e-3745.61Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RABG2_DICDI6.990e-3747.85Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB3D_RAT6.990e-3750.00GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB2A_MAIZE6.990e-3747.34Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MAIZE9.129e-3747.34Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB26_HUMAN1.192e-3646.67Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RB2BV_BETVU3.469e-3646.01Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
YPT3_SCHPO4.531e-3649.08GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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