FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.728e-36
Identity = 77/163 (47.24%), Postives = 105/163 (64.42%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA +N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.728e-36
Identity = 80/185 (43.24%), Postives = 111/185 (60.00%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD-TDSRAEPQTIRINQP 692
            L K + +GDSGVGKS +LLR                  KI+T+ ++GK IKLQIWDTAGQERFR    + YRG   +++VYDVTD+ SF N+  WI+ IE++A DNV K+++GNK+DM  S++ V     Q  AD   I F ETSAK  +N+E+ F S+ +    R+ +   S     TI + +P
Sbjct:    8 LFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDM-ISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVKLCIDRIEEFKPSSTSSSTIILKKP 191          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.728e-36
Identity = 77/182 (42.31%), Postives = 112/182 (61.54%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIRIN 686
            L K++LIGDSGVGKS LL R                    RT++++G+ +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W++ +  HA  N+  +L+GNK D+ +  RAV T   Q+ A++ G+ F ETSA   LNVE+ F +I  ++ + ++     ++  T   N
Sbjct:   12 LFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDL-KHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANAN 192          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 77/163 (47.24%), Postives = 104/163 (63.80%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DISOM7.728e-3647.24Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RABA_DICDI7.728e-3643.24Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAA2A_ARATH7.728e-3642.31Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11B_RAT1.009e-3547.24Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.009e-3547.24Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.009e-3547.24Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN1.009e-3547.24Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11A_RAT1.009e-3547.24Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.009e-3547.24Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.009e-3547.24Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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