FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.111e-50
Identity = 98/163 (60.12%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.475e-50
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIRI 683
            K+LLIGDSGVGKSCLLLR                  KI+T+ LDGK IKLQIWDTAGQERFRTIT++YYRGA GI+LVYD TD+ SF N++ W+  I+++A +NVNK+LVGNK D+  +++ V +++ ++ A+ YGI F ETSAK   NVEE F S+ARDIK RLAD     +P  + I
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDL-VNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDI 189          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.475e-50
Identity = 96/163 (58.90%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L KLLLIGDSGVGK+CL++R                  KIRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 3.232e-50
Identity = 97/163 (59.51%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L KLLLIGDSGVGK+CL++R                  KIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.221e-50
Identity = 101/176 (57.39%), Postives = 125/176 (71.02%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 668
            L KLLLIGDSGVGKSCLLLR                  KIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+   K+ V     +A ADE GI F ETSAK   NVE+ F ++A +IK R+A      +P
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKP 182          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.221e-50
Identity = 96/166 (57.83%), Postives = 124/166 (74.70%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI++HA+++V ++L+GNK DM E KR V  SKG+ +A E+ I+FFETSAK N+N+E+ F ++A DI Q+
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDM-EDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDILQK 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.513e-50
Identity = 95/163 (58.28%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L KLLLIGDSGVGK+CL++R                  +IRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.200e-50
Identity = 96/163 (58.90%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            L KLLLIGDSGVGK+CL++R                  KIRT++++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.403e-50
Identity = 100/183 (54.64%), Postives = 133/183 (72.68%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ-TIRIN 686
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD+ GI F ETSAK   NVE+ F ++A +IK R+    + ++ + +++IN
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKIN 192          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.095e-49
Identity = 99/169 (58.58%), Postives = 123/169 (72.78%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 647
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++A +NVNK+LVGNK+D+  +KR V T   +  A+  GI+F ETSAK   NVE+ F  +A  IK+R+A+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDL-TAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMAN 175          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_MESAU1.111e-5060.12Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB1D_DICDI2.475e-5055.31Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB13_HUMAN2.475e-5058.90Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_RAT3.232e-5059.51Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
YPTV1_VOLCA4.221e-5057.39GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB10_DISOM4.221e-5057.83Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB13_BOVIN5.513e-5058.28Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_MOUSE7.200e-5058.90Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST9.403e-5054.64Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPT1_PHYIN2.095e-4958.58Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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