FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+    R V T +   LA  YGI F ETSAKT   VE+ F+++ R+I+Q
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+    R V T +   LA  YGI F ETSAKT   VE+ F+++ R+I+Q
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 58/164 (35.37%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+    R V T +   LA  YGI F ETSAKT   VE+ F+++ R+I+Q
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q
Sbjct:    5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 55/190 (28.95%), Postives = 99/190 (52.11%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKILVGNKADMD-ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA-----RDIKQRLADTDSRAEPQTIRINQPD 695
            K++++GD  VGK+CL+ R                  ++   E+ G    LQ+WDTAGQERF+ I + YYRGA  I++V+++ D +S  + + W+ + ++++   NV   LVG+K D+   ++ ++       +A E   +++  S+ T  NV E FF +A      ++   +  + +R     +RIN  D
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWAVSSLTGENVREFFFRVAALTFEANVLADVEKSGARHIADVVRINSDD 243          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+    R+V T + Q LA  YGI F ETSAKT   V++ F+++ R+I++
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.950e-19
Identity = 59/164 (35.98%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            K++++G  GVGKS L ++                  + + IE+D     L+I DTAG E+F ++   Y +   G +LVY + ++ SF +I   R+ I  ++++  + V  ILVGNK D+ ES+R V +S+G+ALA+E+G  F ETSAK+   V+E+F  I R +
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR-KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY--EKVPVILVGNKVDL-ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+    R V T + Q LA  YGI F ETSAKT   V++ F+++ R+I++
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RABT2_DICDI (Ras-related protein RabT2 OS=Dictyostelium discoideum GN=rabT2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSAKTNLNVEEVFFSIARDIKQR 638
            LIK+L++GD   GK  +L R                        ++GK  K+QIWD    ERFR+IT AYYRGA G +L+YD T++ SFNN++ WI  I  +   S+N   +++GNK D+    +  P  K +   D   I  F+  SAK ++N+ E F  + + I ++
Sbjct:   25 LIKVLMLGDYKTGKGSVLRRYHYNEFELGVSSIGVDFVIRDYGIVNGKYYKIQIWDANSCERFRSITQAYYRGAHGFMLLYDCTNQESFNNLQFWINEIINKSPNSNNSTIVIIGNKCDLVNDIKIDPI-KSKLFCDSKSITSFQNVSAKDSININEPFEILFKQIIEK 192          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  + R V + + Q LA  YGI + +TSAKT   VE+ F+++ R+I+Q
Sbjct:    5 KLVVVGAKGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIKTSAKTRQGVEDAFYTLVREIRQ 165          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_MONDO2.259e-1935.37GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]
RASN_HUMAN2.259e-1935.37GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RASN_CAVPO2.259e-1935.37GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RASH_MSVNS2.259e-1934.76GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RAB34_MOUSE2.259e-1928.95Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]
RASK_CYPCA2.950e-1934.15GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RAP2A_HUMAN2.950e-1935.98Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RASK_MELGA3.853e-1934.15GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RABT2_DICDI3.853e-1934.91Ras-related protein RabT2 OS=Dictyostelium discoid... [more]
RASH_MSVMO5.033e-1934.15GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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