FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.464e-18
Identity = 55/165 (33.33%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            KL+++G  GVGKS + ++                  KIR I +D +   L I DTAGQ  F  +   Y R   G ++ Y +TD  SF+ +R + + I +   +D+   +LVGNK+D+ +  R V   +G ALA E+   FFETSA     +++VF ++ R+I+++
Sbjct:   23 KLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDL-KQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRK 185          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.464e-18
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+    R V T + Q LA  +GI F ETSAKT   V++ F+++ R+I++
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPT--RTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREIRK 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.912e-18
Identity = 61/185 (32.97%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM---DESKRAVPTSKGQALADEY---GIKFFETSAKTNLNVEEVF-FSIARDIKQRLADTDSRAEPQTIR 680
            K++L+G  GVGK+C + R                    + + ++   ++LQIWDTAGQERFR++   YYR A   +L YDVT  +SF+ +  W+  ++Q+ S ++   +VG K D+   + S R VP  +    A E+        E SAK +  VEEVF   I + + +R AD   +   Q  R
Sbjct:    7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKLLDKREADEQQKHNSQRQR 191          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 53/168 (31.55%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  144 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 647
            ++L ++GD GVGK+ + ++                  + + + +D +   L I DTAGQ+    I   + +   G +LVY VT  SSF+ I++++  I+   S+ V  I++ NK+D+D+ +R V   +G+  A+ +G+ F E SAK  LN++EVF  IA+   +R  D
Sbjct:   15 MRLCVMGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCL-IDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDD-ERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQIAQHCVKRRCD 180          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASK_MONDO (GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 55/164 (33.54%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+    R V T + Q LA  YGI F ETSAKT    ++ F+++ R+I++
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGGDDAFYTLVREIRK 165          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 48/165 (29.09%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSK---------GQALADEYGIKFFETSAKTNLNVEEVF 608
            ++K++ +GDS VGK+ L                      I+ ++++ K + L +WDT GQERF+  +  Y+RGA    L +D+ +E SF N+  W+  I ++   N+  +LVG K+D+  + +++  ++          Q + D+  + +FETSAK + NV E++
Sbjct:    7 MLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDK--VHYFETSAKLSQNVTELY 169          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 55/162 (33.95%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  144 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA 620
            +KL+++G  GVGK+ LL +                    + I L    +KLQIWDT GQERFR++ + +Y+G+ G +L +DVTD  SF  +  W  ++         +   +L+GNK D+  + R VP    Q    E  I +FE SAK ++NV + F  +A
Sbjct:    9 LKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL--ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLA 168          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.262e-18
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                    +   +DG   +L I DTAGQE F  +   Y R   G LLV+ + D  SFN + + + + +     D+   +LVGNKAD+ ES+R VP S+  A    + + +FE SAK  LNV+E F  + R +++
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 192          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.262e-18
Identity = 54/165 (32.73%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            KL+++G  GVGKS + ++                  KIR I +D +   L I DTAGQ  F  +   Y R   G ++ Y +TD  SF+ +R + + I +   +D+   +LVGNK+D+ +  R V   +G +LA E+   FFETSA     +++VF ++ R+I+++
Sbjct:   23 KLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDL-KQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFHALVREIRKK 185          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.262e-18
Identity = 58/164 (35.37%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 629
            K++++G  GVGKS L ++                  + + IE+D     L+I DTAG E+F ++   Y +   G +LVY + ++ SF +I   R+ I  ++++  + V  ILVGNK D+ E +R V +S+G+ALA E+G  F ETSAK+   V+E+F  I R +
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR-KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRY--EKVPLILVGNKVDL-EPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELFAEIVRQM 164          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIT1_HUMAN1.464e-1833.33GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RASK_ORYLA1.464e-1833.54GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RYL2_YARLI1.912e-1832.97Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RASU_DICDI2.498e-1831.55Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RASK_MONDO2.498e-1833.54GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 ... [more]
RABL_DICDI2.498e-1829.09Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAB7B_HUMAN2.498e-1833.95Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RRAS_HUMAN3.262e-1834.15Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RIT1_MOUSE3.262e-1832.73GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RAP2C_MOUSE3.262e-1835.37Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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