FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 52/167 (31.14%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            L++L ++GD GVGK+ + ++                  + + + +D +   L I DTAGQ+    +   + R   G +LVY +T  SSF+ ++ +   I +    D+V  +++GNK+D+D+ +R V   +G+ LA   G+ F E SAK+  N+EEVF    R +K+R
Sbjct:    9 LVRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDD-ERQVTYQEGKDLARCLGMSFMEVSAKSRANIEEVFNETVRSVKRR 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFFSIARDIKQRLADTDSRAEPQT 674
            KL+++GD GVGKS L ++                   ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I      ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q++ + + + + +T
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEKNQKKKKKT 190          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFFSIARDIKQRLADTDSRAEPQT 674
            KL+++GD GVGKS L ++                   ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I      ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q++ + + + + +T
Sbjct:   15 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEKNQKKKKKT 190          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            K++++G  GVGKS + ++                  K + + +D +   L I DTAGQ  F  +   Y RG  G ++ Y VTD  SF     +   I Q   +  +  +LVGNK D+ E  R V T +G +LA EY   FFETSA     +++ F  + R+I+++
Sbjct:   22 KVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDL-EQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKK 184          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                  + + + +D +   L + DTAGQE +  +   Y R   G LLVY +T  +SF  I  + + I +    D    ++V NK D+ E +R V  ++G+ LA  +G KF ETSAK  +NV++ F  + R+I++
Sbjct:   12 KLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDL-EYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREIRK 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 632
            KL+++G  GVGKS L ++                  + + + +D +   L I DTAGQE +  +   Y R   G LLVY +T +SS + +  + + I +   +D V  ++VGNK+D++  K+ V    G  +A +    F ETSAK  +NVEE F+++AR ++
Sbjct:   12 KLVVVGGGGVGKSALTIQLTQSHFVDEYDPTIEDSYR-KQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQ-VSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLARLVR 172          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.790e-16
Identity = 47/181 (25.97%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  144 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 671
            +K++ +G++ VGKSC++ R                   +  +++  + IK+ I+D AG   F  +   +Y+ + G++LVYDV    SF+ + +W+  ++Q        +N+  ++  NK D+ + +R V  S+G+  A+  G  +FETSA++   + E+F S    I     +   R  P+
Sbjct:   17 VKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTK-RRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSITDMCENGGKRPTPE 196          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 56/165 (33.94%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  147 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            KL+++G  GVGKS L ++                   KI T+  DG   +L I DTAGQE F  +   Y R   G LLV+ + D  SFN + + + + +     D+   +LVGNKAD+ E++R V  S+  + +  + + +FE SAK  LNV+E F  + R +++
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICTV--DGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADL-ENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAFEQLVRAVRK 192          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAPB_DICDI (Ras-related protein rapB OS=Dictyostelium discoideum GN=rapB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 47/128 (36.72%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  261 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            +T ELDG+++ +++ DTAG E    +   Y + A G +LVY +  +S+F  I++ +  +      + V  +LVGNK D+D + R V T++G+ LA+ Y    F+E S+K  +NV+ VFFSI + IK++
Sbjct:   61 KTFELDGEQVCIEVLDTAGSEVLVAMRELYMKNAEGFILVYSILVKSTFLEIKDIVEQLFRVKEEEEVPIVLVGNKIDLD-AHREVSTNEGKQLANSYPNCDFWEASSKDRINVDNVFFSIVKRIKEK 187          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 54/172 (31.40%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW----IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEEVFFSIARDIKQR 638
            +IK+++IG+  VGK+ +L R                   +  + +    + LQ+WDT+GQERFR++  +YYRGA   +LV+DVT+E +  +++ W    I   E         I++GNK D D ++     +  Q   D  G  + +F+TSAK N+N+E+VF  I+   + +
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRFVTLKPTIG-----VDFVMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKID-DPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQCENQ 172          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASZ_DICDI1.370e-1631.14Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
RASM_RAT1.370e-1632.02Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE1.370e-1632.02Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RIT2_HUMAN1.790e-1632.12GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RAS_LENED1.790e-1632.32Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAS2_YEAST1.790e-1632.52Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]
DJC27_DANRE1.790e-1625.97DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
RRAS_MOUSE3.053e-1633.94Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RAPB_DICDI3.053e-1636.72Ras-related protein rapB OS=Dictyostelium discoide... [more]
RAB7B_DICDI3.053e-1631.40Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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