FC873385

Overview
NameFC873385
Unique NameFC873385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 7.451e-47
Identity = 94/167 (56.29%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 641
            L KLLLIGDSGVGKSCLLLR                  KI+TIELDGK IKLQIWDTAGQERF TIT++YYRGA G L+VYDVTD+ S+ N++ W++ I++HAS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+++
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQM 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.271e-46
Identity = 96/167 (57.49%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 641
            L KLLLIGDSGVGKSCLLLR                  KIRTIEL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ +F N+R W++ I++ A +NVNK+LVGNK+D+  +K+ V  +  +A AD   I F ETSAK + NVE+ F ++A +IK RL
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDL-VAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRL 173          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.660e-46
Identity = 96/165 (58.18%), Postives = 119/165 (72.12%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            L KLLLIGDSGVGKSCLLLR                  KIRTI LDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  SFNN++ W++ I+++A D+V ++LVGNK D+ E K+ V TS  +  AD  GI F ETSAK++ NVE+ F  +A +IK+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIE-KKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.307e-46
Identity = 92/166 (55.42%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 638
            ++KLLL+GDSGVGKSCLLLR                  KIRTIE  GKRIKLQ+WDTAGQERFRTITTAYYRGAMGI+L+YDVTD  SF N+ NW + + QHA+++    LVGNK D DE  R V   +GQ LA +  + F E SAK+N NV+ +F+ +A  I+++
Sbjct:   14 IMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCD-DEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.113e-42
Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 644
            L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++
Sbjct:    8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.480e-42
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            L+K+L+IGDSGVGKSC+LLR                   IRTIELDGK+IKLQIWDTAGQERF+TITT+YYRGA G+++VYD+T   SFN+I+ W+ ++++ AS +V K++VGNK D++ SKRAV     +  ADE  I   ETSAK +  ++E F  +A DIK+
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLN-SKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.979e-41
Identity = 84/180 (46.67%), Postives = 120/180 (66.67%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA---DTDSRAEPQ 671
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN++++W   I+ ++ +N   +LVGNK DMD S+R V   +G+ LAD+ G++FFETSAK N+NV+ VF  +   I  ++A   D D + +P+
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMD-SERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDPQQQPK 200          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.042e-40
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  +   + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.042e-40
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  +   + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of FC873385 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.361e-40
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 3
Query:  141 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 635
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  +   + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
The following BLAST results are available for this feature:
BLAST of FC873385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_HUMAN7.451e-4756.29Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI1.271e-4657.49Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1B_DICDI1.660e-4658.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
SEC4_CANAL6.307e-4655.42Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
YPT1_YEAST1.113e-4251.79GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1C_DICDI2.480e-4252.73Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB3_CAEEL7.979e-4146.67Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB15_RAT1.042e-4049.70Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN1.042e-4049.70Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN1.361e-4049.70Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873385 ID=FC873385; Name=FC873385; organism=Citrus clementina; type=EST; length=832bp
CGTTCACTCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGC
GCTCTCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTAT
GGCTGCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGC
TGCTCCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGA
TTCTCTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGA
CTTCAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAA
TATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAGTC
ATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCAT
CTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAA
AGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATA
TGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGG
AGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACA
GACTCTAGGGCTGAGCCTCAGACTATCAGAATTAACCAACCTGACCAGGC
AGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAG
CAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTG
GGTTGGGACAACTAATTTTGTCAACTATATCA
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