FC873396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 3.853e-48 Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLK+R +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 3.853e-48 Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLK+R +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 3.853e-48 Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLK+R +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 3.853e-48 Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLK+R +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3) HSP 1 Score: 190.274 bits (482), Expect = 1.121e-47 Identity = 95/114 (83.33%), Postives = 102/114 (89.47%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS RAG+QFPVGRIHRHLK+R +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K Sbjct: 8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3) HSP 1 Score: 183.726 bits (465), Expect = 1.049e-45 Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K I+RSSRAG+QFPVGRIHR LK+R +HGRVG TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDTGKAKATSITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 183.726 bits (465), Expect = 1.049e-45 Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K I+RSSRAG+QFPVGRIHR LK+R +HGRVG TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K Sbjct: 8 KDTGKAKATSITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGK 121
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3) HSP 1 Score: 182.956 bits (463), Expect = 1.790e-45 Identity = 92/114 (80.70%), Postives = 100/114 (87.72%), Query Frame = 2 Query: 104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 KD K K + +SRS+RAG+QFPVGRIHR LK R + GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK Sbjct: 10 KDSGKSKSKVVSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2) HSP 1 Score: 174.866 bits (442), Expect = 4.873e-43 Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = 2 Query: 116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445 K+KK P SRS +AG+QFPVGRIHR LK R++A RVGATAAVY A+ILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K Sbjct: 22 KNKKTPQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.493e-41 Identity = 80/112 (71.43%), Postives = 99/112 (88.39%), Query Frame = 2 Query: 119 DKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTK 454 + K+ ++S+RAG+QFPVGRIHRHLKSR H R+GA AAVY ++ILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI +K Sbjct: 19 EPKKQTTQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSK 130 The following BLAST results are available for this feature:
BLAST of FC873396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 242
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873396 ID=FC873396; Name=FC873396; organism=Citrus clementina; type=EST; length=819bpback to top |