FC873396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26 Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 + +SRS+RAG+QFPVGRI R LK+ + R+G A VYLA++LEYL AEVLELAGNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ TK Sbjct: 18 KQVSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTK 126
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26 Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 + +SRS+RAG+QFPVGRI R LK+ + R+G A VYLA++LEYL AEVLELAGNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ TK Sbjct: 18 KQVSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTK 126
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26 Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 2 Query: 122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445 +K+ ++RS RAG+QFPVGR+ R LK A RVG A VYLA++LEYL AEVLELAGNA++D K RI+PRHL LA+R DEEL L+ G TIA GGV+P+I+ L+ K Sbjct: 20 RKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPK 127
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26 Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = 2 Query: 122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 +K+ ++RS RAG+QFPVGRI R LK A RVG A VYLA++LEYL AEVLELAGNA++D K RI+PRHL LA+R D EL L+ G TIA GGV+P+I+ L+ K T+ Sbjct: 20 RKKAVTRSVRAGLQFPVGRIGRFLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRTE 130
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.206e-25 Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 2 Query: 122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 457 +K+ +SRS +AG+QFPVGRI R+LK A VG A VYLA++LEYL AEVLELAGNA++D K RI PRH+ LAIR DEEL L+ G TIA GGV+P+I+ L+ K T + Sbjct: 25 RKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQX-VGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25 Identity = 67/114 (58.77%), Postives = 82/114 (71.93%), Query Frame = 2 Query: 128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGR----VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 + +SRS+RAG+QFPVGRI R LK HGR VG A VYLA++LEYL AEVLELAGNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ +K Sbjct: 18 KQVSRSARAGLQFPVGRISRFLK-----HGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSK 126
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25 Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 2 Query: 110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445 K +K+ +++S +AG+QFPVGRI R+LK A RVG+ A +YLA++LEYL AEVLELAGNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K Sbjct: 14 KGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPK 125
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25 Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 2 Query: 137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445 SRS++AG+ FPVGR+HR L+ A R+G+ A VYL ++LEYL AE+LELAGNA++D K RI PRHLQLAIR D+EL+ L+ TIA GGV+P+IH++L+ K Sbjct: 17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 119
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25 Identity = 66/114 (57.89%), Postives = 82/114 (71.93%), Query Frame = 2 Query: 128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGR----VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454 + +SRS+RAG+QFPVGRI R LK HGR +G A VYLA++LEYL AEVLELAGNA+KD K RI PRH+ LAIR DEEL+ L+ TIA GGV+P+I+ L+ +K Sbjct: 18 KQVSRSARAGLQFPVGRISRFLK-----HGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSK 126
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.687e-25 Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 2 Query: 137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445 SRS++AG+ FPVGR+HR L+ A R+G+ A VYL ++LEYL AE+LELAGNA++D K RI PRHLQLAIR D+EL+ L+ TIA GGV+P+IH++L+ K Sbjct: 18 SRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120 The following BLAST results are available for this feature:
BLAST of FC873396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 242
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873396 ID=FC873396; Name=FC873396; organism=Citrus clementina; type=EST; length=819bpback to top |