FC873396

Overview
NameFC873396
Unique NameFC873396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            + +SRS+RAG+QFPVGRI R LK+   +  R+G  A VYLA++LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   TK
Sbjct:   18 KQVSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTK 126          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            + +SRS+RAG+QFPVGRI R LK+   +  R+G  A VYLA++LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   TK
Sbjct:   18 KQVSRSARAGLQFPVGRISRFLKNGRYSE-RIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKTK 126          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 65/109 (59.63%), Postives = 82/109 (75.23%), Query Frame = 2
Query:  122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            +K+ ++RS RAG+QFPVGR+ R LK    A  RVG  A VYLA++LEYL AEVLELAGNA++D K  RI+PRHL LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   20 RKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPK 127          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 66/112 (58.93%), Postives = 83/112 (74.11%), Query Frame = 2
Query:  122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            +K+ ++RS RAG+QFPVGRI R LK    A  RVG  A VYLA++LEYL AEVLELAGNA++D K  RI+PRHL LA+R D EL  L+ G TIA GGV+P+I+  L+ K T+
Sbjct:   20 RKKAVTRSVRAGLQFPVGRIGRFLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRTE 130          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.206e-25
Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  122 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTKD 457
            +K+ +SRS +AG+QFPVGRI R+LK    A   VG  A VYLA++LEYL AEVLELAGNA++D K  RI PRH+ LAIR DEEL  L+ G TIA GGV+P+I+  L+ K T +
Sbjct:   25 RKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQX-VGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25
Identity = 67/114 (58.77%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGR----VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            + +SRS+RAG+QFPVGRI R LK     HGR    VG  A VYLA++LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   +K
Sbjct:   18 KQVSRSARAGLQFPVGRISRFLK-----HGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSK 126          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.575e-25
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            K   +K+ +++S +AG+QFPVGRI R+LK    A  RVG+ A +YLA++LEYL AEVLELAGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   14 KGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQ-RVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPK 125          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 2
Query:  137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            SRS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 119          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 66/114 (57.89%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  128 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGR----VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            + +SRS+RAG+QFPVGRI R LK     HGR    +G  A VYLA++LEYL AEVLELAGNA+KD K  RI PRH+ LAIR DEEL+ L+   TIA GGV+P+I+  L+   +K
Sbjct:   18 KQVSRSARAGLQFPVGRISRFLK-----HGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSK 126          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.687e-25
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 2
Query:  137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 445
            SRS++AG+ FPVGR+HR L+    A  R+G+ A VYL ++LEYL AE+LELAGNA++D K  RI PRHLQLAIR D+EL+ L+   TIA GGV+P+IH++L+ K
Sbjct:   18 SRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPK 120          
The following BLAST results are available for this feature:
BLAST of FC873396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
H2A1_TETTH7.070e-2659.09Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY7.070e-2659.09Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]
H2A1_PEA7.070e-2659.63Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A2_PEA9.234e-2658.93Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A_MAIZE1.206e-2558.41Histone H2A OS=Zea mays PE=2 SV=1[more]
H2AX_TETTH1.575e-2558.77Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2A1_SOLLC1.575e-2555.75Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_KLULA2.057e-2558.65Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2AX_TETPY2.057e-2557.89Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A2_YEAST2.687e-2558.65Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873396 ID=FC873396; Name=FC873396; organism=Citrus clementina; type=EST; length=819bp
AAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGACA
TGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGAA
TGTTGTTCGTTATGTACTATTTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGACATGATTATGAA
AGCAGCCATCATCTGTGTTTCTTTATAATTTAGGACTATTGGTCACTTTT
TACAAAATGGATTGTTGCT
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