FC873396

Overview
NameFC873396
Unique NameFC873396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1213 contig Ccv1_Contig1213:1..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.166e-34
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445
            KD   K   S S++AG+QFP GR+ R LK+      RVGA AAVY+ ++LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   16 KDAAGKTQKSHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPFU (Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.166e-34
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445
            KD   K   S S++AG+QFP GR+ R LK+      RVGA AAVY+ ++LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   16 KDAAGKTQKSHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPCL (Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.166e-34
Identity = 75/112 (66.96%), Postives = 90/112 (80.36%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445
            KD   K   S S++AG+QFP GR+ R LK+      RVGA AAVY+ ++LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   16 KDAAGKTQKSHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.571e-33
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 2
Query:  137 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445
            S S++AG+QFP GR+ R LK+      RVGA AAVY+ ++LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   24 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 126          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPTN (Histone H2A.Z OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.052e-33
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 2
Query:  110 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 445
            KD   K   S S++AG+QFP G + R LK+      RVGA AAVY+ ++LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   16 KDSAGKTQKSHSAKAGLQFPRGSVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A8_ARATH (Putative histone H2A.8 OS=Arabidopsis thaliana GN=At4g13570 PE=5 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.971e-33
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 2
Query:  155 GIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIH 427
            G  F V RIH+ LK+R++AH  VGAT  VY+ SILEYLT EVL+LA N SKDLKVKRITPRHLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct:   28 GEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH 118          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_MYTTR (Histone H2A OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 1.054e-29
Identity = 74/114 (64.91%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A GRVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYA-GRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.348e-29
Identity = 70/111 (63.06%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  125 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K+ +SRS++AG+QFPVGRI R+LK    A  R+GA A VYLA++LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+ + TIA GGV+P+IH  L+ K TK
Sbjct:   12 KKAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTK 121          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.067e-29
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K K +  SRSSRAG+QFPVGR+HR LK     + RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KAKSKAKSRSSRAGLQFPVGRVHRFLKKGNYGN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 3.067e-29
Identity = 73/118 (61.86%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGRIHR L+    A  R+GA A VYLA++LEYLTAE+LELAGNAS+D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
The following BLAST results are available for this feature:
BLAST of FC873396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
H2AZ_NEOFI3.166e-3466.96Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]
H2AZ_ASPFU3.166e-3466.96Histone H2A.Z OS=Aspergillus fumigatus GN=htz1 PE=... [more]
H2AZ_ASPCL3.166e-3466.96Histone H2A.Z OS=Aspergillus clavatus GN=HTZ1 PE=3... [more]
H2AZ_MONAN1.571e-3369.90Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1[more]
H2AZ_ASPTN2.052e-3366.07Histone H2A.Z OS=Aspergillus terreus (strain NIH 2... [more]
H2A8_ARATH5.971e-3376.92Putative histone H2A.8 OS=Arabidopsis thaliana GN=... [more]
H2A_MYTTR1.054e-2964.91Histone H2A OS=Mytilus trossulus PE=3 SV=3[more]
H2A_CHLRE2.348e-2963.06Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A2_PSAMI3.067e-2962.83Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A1A_HUMAN3.067e-2961.86Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873396 ID=FC873396; Name=FC873396; organism=Citrus clementina; type=EST; length=819bp
AAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGACA
TGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGAA
TGTTGTTCGTTATGTACTATTTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGACATGATTATGAA
AGCAGCCATCATCTGTGTTTCTTTATAATTTAGGACTATTGGTCACTTTT
TACAAAATGGATTGTTGCT
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