FC873396

Overview
NameFC873396
Unique NameFC873396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1213 contig Ccv1_Contig1213:1..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.165e-28
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K   K + +  +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.165e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 72/114 (63.16%), Postives = 86/114 (75.44%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 454
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 451
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 454
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 2
Query:  104 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 451
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of FC873396 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.522e-28
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = 2
Query:  116 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 451
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
The following BLAST results are available for this feature:
BLAST of FC873396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
H2A1_XENLA1.165e-2859.32Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A1_RAT1.165e-2861.02Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A_PARAN1.522e-2862.83Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_LITVA1.522e-2863.16Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A_CAIMO1.522e-2861.54Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AJ_MACFA1.522e-2861.02Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN1.522e-2861.02Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_BOVIN1.522e-2861.02Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]
H2A4_CHICK1.522e-2861.54Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A3_PSAMI1.522e-2862.83Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873396 ID=FC873396; Name=FC873396; organism=Citrus clementina; type=EST; length=819bp
AAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGACA
TGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGGT
AACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTCG
TGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCAA
GGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGCT
TCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATGC
AAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTTG
CTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGCT
GGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTAC
CAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACTT
TGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTTT
GTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTTG
ACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGAA
TGTTGTTCGTTATGTACTATTTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGACATGATTATGAA
AGCAGCCATCATCTGTGTTTCTTTATAATTTAGGACTATTGGTCACTTTT
TACAAAATGGATTGTTGCT
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