FC873423
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RICPU (Ribosomal RNA large subunit methyltransferase E OS=Rickettsia peacockii (strain Rustic) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24 Identity = 76/200 (38.00%), Postives = 108/200 (54.00%), Query Frame = 2 Query: 218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817 R D Y KA+ +G+R+R+A+KLL+I E+F +F ++VDL AAPG WSQV S+ + K S ++ I++ID+ + + GV VQ D A T E++I+ DG +AD+V+ D A + G D L VLK G FIAKIFRG + L ++K F V KP SSR+ S E + V Sbjct: 31 RQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFIPNMKIVDLGAAPGGWSQVASKLI----KASDNNLNNK---IISIDVLEIEHVAGVEFVQKDFFEADTEELIIQALDG-RADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVKREFKTVKHFKPSSSRSESTEIYLV 222
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_HALMA (Ribosomal RNA large subunit methyltransferase E OS=Haloarcula marismortui GN=rlmE PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24 Identity = 71/208 (34.13%), Postives = 110/208 (52.88%), Query Frame = 2 Query: 227 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEG----VIQVQGDITNARTAE---VVIRHFDGC--KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 +D YY +AK+EG+RARSA+KL Q+D+ + + VVDL AAPG W QV + ++ G+ +V +D Q + +E V V+GD+T T + ++ DG D+V+ D AP++TG +D+D L+ V T +L GG F AK+F G+D L ++ F V +P +SR+SS E + V + Sbjct: 4 KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAERI------------GERGTLVGVDRQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPVDVVISDMAPNMTGQYDLDHARSVHLVRQAFEVATDLLDAGGDFCAKVFDGQDLDDLIADIEPEFEYVREVRPDASRDSSSELYLVAK 199
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_GLUOX (Ribosomal RNA large subunit methyltransferase E OS=Gluconobacter oxydans GN=rlmE PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24 Identity = 67/201 (33.33%), Postives = 101/201 (50.25%), Query Frame = 2 Query: 215 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817 +R D Y A+++GWR+R+AFKL++ID+ F + R++DL AAPG W+QV ++ +V +DL P+ P+ G ++GD T+ + ++ G ADLV+ D AP+ TG D L L VL EGG FIAK+F+G + +K F V KP +SR S E + + Sbjct: 67 NRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPGGWTQVAVKR--------------GAKHVVGLDLLPVDPVAGAEIIEGDFTDPEMPD-RLKDMLGGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDMLALMKTAFSSVKHVKPPASRKESSELYVI 252
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RHIEC (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24 Identity = 75/202 (37.13%), Postives = 102/202 (50.50%), Query Frame = 2 Query: 218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 R D Y ++A+ EG+RAR+AFKLL+IDE+++I KR++DL AAPGSWSQ+ ++ + D R + AID MA + GV +Q D + +A + G DLV+ D A TG H D L VL EGG F+ K F+G L LK F V KP SSR S+E F + + Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGAKRIIDLGAAPGSWSQIAAK---VTGSTDEDIR------VAAIDFLEMAQLPGVWILQLDFLDP-SAPGKLMEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLTKTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAK 225
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RALME (Ribosomal RNA large subunit methyltransferase E OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24 Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 D Y + A+ EG+RAR+A+KL +ID++ + + + +VDL AAPGSWSQ KL SP +++G + +VAID+ PM P+ V +QGD + +VV+ G + DLV+ D AP+++G+ D L L LK G + K F G S + + K F VV KPK+SR+ S E F Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGSWSQYARNKL----AASPRAKDGRIDGAVVAIDILPMEPVADVTFIQGDFREEEVFRQLEQVVLDASGGSRIDLVISDMAPNLSGVASADAARIEYLCDLALDFAQAHLKPEGSLLVKCFHGSGYSQIVEKFKRQFKVVASRKPKASRDKSSETF 211
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_HAHCH (Ribosomal RNA large subunit methyltransferase E OS=Hahella chejuensis (strain KCTC 2396) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.046e-24 Identity = 64/198 (32.32%), Postives = 106/198 (53.54%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 D+Y +K+KE+G+R+R+++KL+++D + + V+DL AAPG WSQV++ + GD +VA DL M I GV QGD T + ++ + DLV+ D AP+++G+ +D L+ L + VLK+ G F+AK+F+G+ + + + F V KP +SR S E + V + Sbjct: 17 DVYVKKSKEDGFRSRASYKLIELDRQDKLLRPGMTVIDLGAAPGGWSQVVADVV------------GDQGKVVACDLLSMDSIAGVTFFQGDFTEDEMLDAILNEVNSRPVDLVISDMAPNMSGMKSVDIPKAMYLVELALDLACRVLKKNGCFVAKVFQGEGFDQILQESRGRFSSVNIRKPDASRARSREIYLVAK 202
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_SACD2 (Ribosomal RNA large subunit methyltransferase E OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 D Y + ++++G+R+R+++KL++++++ + ++ + VVDL AAPG WSQV ++ + GD +VA D+ PM + GV VQGD T E ++ KADLV+ D AP+++G+ D+D+ L+ L + LK GG F K+F+G+ L + F V KP +SR S E + V + Sbjct: 17 DQYVKDSQKDGYRSRASYKLIELNDKDKLIKSGQTVVDLGAAPGGWSQVAAQIV------------GDGGRVVASDILPMDSLAGVDFVQGDFTEEAVLEQLLELLGEAKADLVISDMAPNMSGIADVDQPKSMYLVELALDMAKTTLKIGGSFACKVFQGEGFDELVLACRECFQKVLVRKPSASRPRSREVYIVAK 202
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RHISN (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium sp. (strain NGR234) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 75/202 (37.13%), Postives = 102/202 (50.50%), Query Frame = 2 Query: 218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 R D Y ++A+ EG+RAR+AFKLL+IDE+ I +R++DL AAPGSWSQ+ ++ +S + D P + AID M PI GV +Q D + E ++ G DLV+ D A TG D L VL +GG F+AK F+G L LK F V KP SSR S+E F + + Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGARRIIDLGAAPGSWSQIAAK--------VTNSTDAD-PRVAAIDFLEMDPIPGVRFLQLDFLDPEAPE-KLKEAIGGTPDLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGHFLAKTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAK 225
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RHIL3 (Ribosomal RNA large subunit methyltransferase E OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 73/202 (36.14%), Postives = 100/202 (49.50%), Query Frame = 2 Query: 218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 R D Y ++A+ EG+RAR+AFKLL+IDE+ +I +R++DL AAPGSWSQ+ ++ + D R + AID M + GV +Q D + E ++ G DLV+ D A TG H D L VL EGG F+ K F+G L LK F V KP SSR S+E F + + Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGARRIIDLGAAPGSWSQIAAK---VTGSTDDDIR------VAAIDFLEMTQLPGVKILQLDFLDPSAPEKLLEAVGG-TPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAK 225
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXBU (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii GN=rlmE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 2 Query: 224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+ V+DL AAPG WSQV + G +++AIDL PM + VI +QGD I N A V + G + DLV+ D AP+++G+ ++D+ L+ +L GG F+ K+F+G L+ +F V F KP +SR+ S E + Sbjct: 12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199 The following BLAST results are available for this feature:
BLAST of FC873423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 433
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873423 ID=FC873423; Name=FC873423; organism=Citrus clementina; type=EST; length=831bpback to top |