FC873423
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXBN (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 2 Query: 224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+ V+DL AAPG WSQV + G +++AIDL PM + VI +QGD I N A V + G + DLV+ D AP+++G+ ++D+ L+ +L GG F+ K+F+G L+ +F V F KP +SR+ S E + Sbjct: 12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXB2 (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain CbuG_Q212) GN=rlmE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 2 Query: 224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+ V+DL AAPG WSQV + G +++AIDL PM + VI +QGD I N A V + G + DLV+ D AP+++G+ ++D+ L+ +L GG F+ K+F+G L+ +F V F KP +SR+ S E + Sbjct: 12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_METM7 (Ribosomal RNA large subunit methyltransferase E OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24 Identity = 69/204 (33.82%), Postives = 111/204 (54.41%), Query Frame = 2 Query: 224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGC---KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPVVTFAKPKSSRNSSIEAFAV 817 K D YY AK+ +R+R+ +KL Q++E+FN+ + VVDL APG W Q +R + G+ IV IDLQ + P+ E VI ++GD+T E +++ K D+++CD +P+++G+ D+D +L L T +LK+GG F+ K+F+G D Y QL +F KP++SR+ S E + + Sbjct: 13 KNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQA-ARDIV-----------GEKGFIVGIDLQTVKPLPYENVIAIKGDMTK----EEILKQAKDLLPEKPDVIICDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQG-DLFEKYVQLVSEYFDKAFTTKPRASRDESAEVYVI 199
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_MAGSA (Ribosomal RNA large subunit methyltransferase E OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24 Identity = 75/200 (37.50%), Postives = 101/200 (50.50%), Query Frame = 2 Query: 218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817 R D Y +AK G+R+R+AFK++Q+DE F+I + RVVDL AAPG W+QV K+ L P +V +D+ P+ G I +QGD A A ++ G AD+V+ D A TG D L+ L VL GG F+AK+F+G L QLK F V AKP +SR S E + V Sbjct: 44 RQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQVAVEKV---GALKPKGG----GKVVGMDILEWDPLPGAITLQGDFL-ADDAPDRLKEALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQLKKNFTTVRHAKPPASRQGSAETYVV 235
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXBR (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24 Identity = 67/200 (33.50%), Postives = 108/200 (54.00%), Query Frame = 2 Query: 227 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 +D Y ++AK+EG+ +R+A+KLL+I +++ +F+ V+DL AAPG WSQV + G +++AIDL PM + VI +QGD I N A V + G + DLV+ D AP+++G+ ++D+ L+ +L GG F+ K+F+G L+ +F V F KP +SR+ S E + Sbjct: 13 KDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RALSO (Ribosomal RNA large subunit methyltransferase E OS=Ralstonia solanacearum GN=rlmE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24 Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAE----VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 D Y + A+ EG+RAR+A+KL +IDE+ + + + +VDL AAPGSWSQ + KL SP +++G + IVAID+ PM P+ V +QGD + +V+ G K DLV+ D AP+++G+ D + + LK G + K F G S + K F VV KPK+SR+ S E F Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKL----AASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQQLETIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETF 211
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_POLNA (Ribosomal RNA large subunit methyltransferase E OS=Polaromonas naphthalenivorans (strain CJ2) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24 Identity = 70/200 (35.00%), Postives = 106/200 (53.00%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817 D Y ++A++EG+RAR+AFKL ++DE + + VVDL + PG+WSQ + RKL P + + G I+ +DL PM PIEGV+ +QGD A+ + + K DLV+ D AP+++G+ D + L+ + +K G + K+F G L + F VV KPK+SR +S E F V Sbjct: 40 DPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGAWSQYVRRKL-SPTGAAVGALNG---RIIGLDLLPMEPIEGVVFIQGDFREPEVLAKLEQALSTEKGPVKVDLVISDMAPNLSGIESADAARIAHLVELAVEFAQTRMKPDGALVVKLFHGSGYDDLVKLFQASFKVVKRMKPKASRPNSSETFLV 235
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_CUPTR (Ribosomal RNA large subunit methyltransferase E OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24 Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811 D Y + A+ EG+RAR+A+KL +IDE+ + + +VDL AAPGSWSQ KL SP +R+G + +VAIDL PM P+ V +QGD VV+ G K DLV+ D AP+++G+ D L L LK G + K F G S + + K F VV KPK+SR+ S E F Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL----ADSPRARDGRIDGAVVAIDLLPMEPVADVTFIQGDFREESVFRELESVVLDASGGNKIDLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSGYSQIVEKFKRQFKVVAKRKPKASRDKSSETF 211
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_CHRSD (Ribosomal RNA large subunit methyltransferase E OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24 Identity = 62/198 (31.31%), Postives = 109/198 (55.05%), Query Frame = 2 Query: 230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 D Y +++ ++G+R+R+++KLL++D + + + V+DL AAPG WSQ+ + K+ GD ++A D+ M + GV VQGD T E ++ +G + DLV+ D AP+++G+ +D+ L+ L + L GG+F+AK+F+G+ +L+ F V KP++SR S E + + E Sbjct: 21 DRYVQRSWQDGYRSRASYKLLELDAKDALLKPGMTVIDLGAAPGGWSQIAADKV------------GDKGCVIASDILEMDALAGVTFVQGDFTEMEVLEQILVALEGRRVDLVMSDMAPNMSGMAAIDQPQAMYLVELALDLARQTLSPGGRFLAKVFQGEGFDAYLKELRGSFRKVVTRKPEASRARSREVYLLAE 206
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_AGRVS (Ribosomal RNA large subunit methyltransferase E OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rlmE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24 Identity = 74/202 (36.63%), Postives = 102/202 (50.50%), Query Frame = 2 Query: 218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823 R D Y ++AK EG+RAR+AFKLL+IDE+ NI + +R++DL AAPGSWSQ+ A S + D+ + AID M + GV +Q D + + +++ G D+V+ D A TG D L VL EGG F+AK F+G L LK F V KP SSR S+E F + + Sbjct: 34 RHINDPYVQRAKLEGYRARAAFKLLEIDEKHNILKGARRIIDLGAAPGSWSQI--------AANVTGSTDSDI-RVAAIDFLEMTQLPGVKILQLDFLDPQAPALLMEAVGGV-PDVVISDMAAPTTGHQKTDHIRTMHLCEVAAYFAVEVLAEGGHFLAKTFQGGTEKDLLNMLKQNFKQVIHIKPASSRQESVEMFLLAK 225 The following BLAST results are available for this feature:
BLAST of FC873423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 433
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873423 ID=FC873423; Name=FC873423; organism=Citrus clementina; type=EST; length=831bpback to top |