FC873423

Overview
NameFC873423
Unique NameFC873423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXBN (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 2
Query:  224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811
            ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXB2 (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain CbuG_Q212) GN=rlmE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 67/201 (33.33%), Postives = 109/201 (54.23%), Query Frame = 2
Query:  224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811
            ++D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   12 EKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_METM7 (Ribosomal RNA large subunit methyltransferase E OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 69/204 (33.82%), Postives = 111/204 (54.41%), Query Frame = 2
Query:  224 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGC---KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPVVTFAKPKSSRNSSIEAFAV 817
            K D YY  AK+  +R+R+ +KL Q++E+FN+ +    VVDL  APG W Q  +R +            G+   IV IDLQ + P+  E VI ++GD+T     E +++        K D+++CD +P+++G+ D+D     +L    L   T +LK+GG F+ K+F+G D    Y QL   +F      KP++SR+ S E + +
Sbjct:   13 KNDHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQA-ARDIV-----------GEKGFIVGIDLQTVKPLPYENVIAIKGDMTK----EEILKQAKDLLPEKPDVIICDASPNISGVWDVDHARSLELTTMALMTATKMLKKGGNFVVKVFQG-DLFEKYVQLVSEYFDKAFTTKPRASRDESAEVYVI 199          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_MAGSA (Ribosomal RNA large subunit methyltransferase E OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 75/200 (37.50%), Postives = 101/200 (50.50%), Query Frame = 2
Query:  218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817
            R   D Y  +AK  G+R+R+AFK++Q+DE F+I +   RVVDL AAPG W+QV   K+     L P         +V +D+    P+ G I +QGD   A  A   ++   G  AD+V+ D A   TG    D      L+   L     VL  GG F+AK+F+G     L  QLK  F  V  AKP +SR  S E + V
Sbjct:   44 RQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQVAVEKV---GALKPKGG----GKVVGMDILEWDPLPGAITLQGDFL-ADDAPDRLKEALGGPADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQLKKNFTTVRHAKPPASRQGSAETYVV 235          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_COXBR (Ribosomal RNA large subunit methyltransferase E OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.196e-24
Identity = 67/200 (33.50%), Postives = 108/200 (54.00%), Query Frame = 2
Query:  227 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGD-----ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811
            +D Y ++AK+EG+ +R+A+KLL+I +++ +F+    V+DL AAPG WSQV    +            G   +++AIDL PM  +  VI +QGD     I N   A V  +   G + DLV+ D AP+++G+ ++D+     L+         +L  GG F+ K+F+G         L+ +F  V F KP +SR+ S E +
Sbjct:   13 KDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLV------------GPKGVVIAIDLLPMQSMLDVIFIQGDFNEPEIFNQLEAIVAKKTLTG-QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLINLRPYFNQVKFLKPSASRSRSSEIY 199          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_RALSO (Ribosomal RNA large subunit methyltransferase E OS=Ralstonia solanacearum GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 72/199 (36.18%), Postives = 105/199 (52.76%), Query Frame = 2
Query:  230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAE----VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811
            D Y + A+ EG+RAR+A+KL +IDE+  + +  + +VDL AAPGSWSQ +  KL      SP +++G +   IVAID+ PM P+  V  +QGD       +    +V+    G K DLV+ D AP+++G+   D      +    +      LK  G  + K F G   S +    K  F VV   KPK+SR+ S E F
Sbjct:   17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKL----AASPRAKDGRIDGAIVAIDILPMEPVADVTFIQGDFREESVFQQLETIVLDATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSGYSQIVEMFKRHFRVVAPRKPKASRDKSSETF 211          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_POLNA (Ribosomal RNA large subunit methyltransferase E OS=Polaromonas naphthalenivorans (strain CJ2) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 70/200 (35.00%), Postives = 106/200 (53.00%), Query Frame = 2
Query:  230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817
            D Y ++A++EG+RAR+AFKL ++DE   + +    VVDL + PG+WSQ + RKL  P   +  +  G    I+ +DL PM PIEGV+ +QGD       A+  + +       K DLV+ D AP+++G+   D    + L+   +      +K  G  + K+F G     L    +  F VV   KPK+SR +S E F V
Sbjct:   40 DPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGAWSQYVRRKL-SPTGAAVGALNG---RIIGLDLLPMEPIEGVVFIQGDFREPEVLAKLEQALSTEKGPVKVDLVISDMAPNLSGIESADAARIAHLVELAVEFAQTRMKPDGALVVKLFHGSGYDDLVKLFQASFKVVKRMKPKASRPNSSETFLV 235          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_CUPTR (Ribosomal RNA large subunit methyltransferase E OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 76/199 (38.19%), Postives = 103/199 (51.76%), Query Frame = 2
Query:  230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 811
            D Y + A+ EG+RAR+A+KL +IDE+  +    + +VDL AAPGSWSQ    KL      SP +R+G +   +VAIDL PM P+  V  +QGD            VV+    G K DLV+ D AP+++G+   D      L    L      LK  G  + K F G   S +  + K  F VV   KPK+SR+ S E F
Sbjct:   17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKL----ADSPRARDGRIDGAVVAIDLLPMEPVADVTFIQGDFREESVFRELESVVLDASGGNKIDLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSGYSQIVEKFKRQFKVVAKRKPKASRDKSSETF 211          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_CHRSD (Ribosomal RNA large subunit methyltransferase E OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 62/198 (31.31%), Postives = 109/198 (55.05%), Query Frame = 2
Query:  230 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823
            D Y +++ ++G+R+R+++KLL++D +  + +    V+DL AAPG WSQ+ + K+            GD   ++A D+  M  + GV  VQGD T     E ++   +G + DLV+ D AP+++G+  +D+     L+   L +    L  GG+F+AK+F+G+       +L+  F  V   KP++SR  S E + + E
Sbjct:   21 DRYVQRSWQDGYRSRASYKLLELDAKDALLKPGMTVIDLGAAPGGWSQIAADKV------------GDKGCVIASDILEMDALAGVTFVQGDFTEMEVLEQILVALEGRRVDLVMSDMAPNMSGMAAIDQPQAMYLVELALDLARQTLSPGGRFLAKVFQGEGFDAYLKELRGSFRKVVTRKPEASRARSREVYLLAE 206          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RLME_AGRVS (Ribosomal RNA large subunit methyltransferase E OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rlmE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 74/202 (36.63%), Postives = 102/202 (50.50%), Query Frame = 2
Query:  218 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823
            R   D Y ++AK EG+RAR+AFKLL+IDE+ NI +  +R++DL AAPGSWSQ+        A     S + D+  + AID   M  + GV  +Q D  + +   +++    G   D+V+ D A   TG    D      L          VL EGG F+AK F+G     L   LK  F  V   KP SSR  S+E F + +
Sbjct:   34 RHINDPYVQRAKLEGYRARAAFKLLEIDEKHNILKGARRIIDLGAAPGSWSQI--------AANVTGSTDSDI-RVAAIDFLEMTQLPGVKILQLDFLDPQAPALLMEAVGGV-PDVVISDMAAPTTGHQKTDHIRTMHLCEVAAYFAVEVLAEGGHFLAKTFQGGTEKDLLNMLKQNFKQVIHIKPASSRQESVEMFLLAK 225          
The following BLAST results are available for this feature:
BLAST of FC873423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RLME_COXBN3.978e-2433.33Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_COXB23.978e-2433.33Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_METM75.196e-2433.82Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_MAGSA5.196e-2437.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_COXBR5.196e-2433.50Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_RALSO6.786e-2436.18Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_POLNA6.786e-2435.00Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_CUPTR6.786e-2438.19Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_CHRSD6.786e-2431.31Ribosomal RNA large subunit methyltransferase E OS... [more]
RLME_AGRVS6.786e-2436.63Ribosomal RNA large subunit methyltransferase E OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873423 ID=FC873423; Name=FC873423; organism=Citrus clementina; type=EST; length=831bp
AGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCAG
GGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCTT
TCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGTG
CAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTATA
TCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGCA
AAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAGA
CGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGTG
CTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCCG
GCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGGC
TATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAGG
GTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGAT
GGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTGG
CCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGTT
TAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAAG
ATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTATT
TTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGCA
TAGAGGCATTCGCTGTTTGTGAGATTATTCC
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