FC873428

Overview
NameFC873428
Unique NameFC873428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  471 SDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            SDL  AT  F    +L +G FG VY G +  G  VAVK+L   +   D+E   E+E L R+ H NLV L G CI G  R  +YE + +G++++ LH
Sbjct:  537 SDLLSATSNFDRDTLLADGKFGPVYRGFLPGGIHVAVKVLVHGSTLSDQEAARELEFLGRIKHPNLVPLTGYCIAGDQRIAIYEYMENGNLQNLLH 632          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHGV*QNRGP 782
            K  +  DL  +T  F    I+G GGFG VY   + +G +VA+K L+ +    +REF AEVE LSR  H NLV L G C     R L+Y  + +GS++  LH   +N GP
Sbjct:  720 KELSYDDLLDSTNSFDQANIIGCGGFGMVYKATLPDGKKVAIKKLSGDCGQIEREFEAEVETLSRAQHPNLVLLRGFCFYKNDRLLIYSYMENGSLDYWLHE--RNDGP 826          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 37/113 (32.74%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLL-------------TRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            + F  S++   T  F+  +++G+GGFG VY G +++GTE+AVK++             + ++    +EF  E E+L  +HHRNL   +G C +GR+  L+YE + +G+++ +L
Sbjct:  555 RRFTYSEVSSITNNFN--KVIGKGGFGIVYLGSLEDGTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMALIYEYMANGNLQDYL 665          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKL--LTRNNQNG----------DREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            F++ +L  AT+ FS +  LG G FG VY GV+ +G  VA+K   LT    +G          D  F+ E+E +SRL+H+NLV+L+G   +   R LVYE + +GS+  HLH
Sbjct:  431 FSIDELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKDSAFVNELESMSRLNHKNLVRLLGFYEDTEERILVYEYMKNGSLADHLH 541          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK1_ARATH (Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  450 SVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            S   F    LEKATE F     LG+GG G VY G++ +G  VAVK L  N +    +F  EV ++S + H+NLV+L+G  IEG    LVYE V + S++  L
Sbjct:  302 SCVNFKYEMLEKATESFHDSMKLGQGGAGSVYKGILPDGRIVAVKKLFFNTREWADQFFNEVNLISGVQHKNLVRLLGCSIEGPKSLLVYEYVHNRSLDQIL 403          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: IRAK1_MOUSE (Interleukin-1 receptor-associated kinase 1 OS=Mus musculus GN=Irak1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 48/111 (43.24%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  474 DLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDRE-------FIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHGV*QNRGPL 785
            ++ + T  FS +  +GEGGFGCVY  VM N T  AVK L    +  D E       F+ EVE LSR  H N+V   G C E    CLVY  +P+GS+E  LH   Q   PL
Sbjct:  204 EISQGTCNFSEELRIGEGGFGCVYRAVMRN-TTYAVKRL---KEEADLEWTMVKQSFLTEVEQLSRFRHPNIVDFAGYCAESGLYCLVYGFLPNGSLEDQLHLQTQACSPL 310          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: ACCR1_ARATH (Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNN--QNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            + F LS+L+ AT  F     LG G +G VY  V+ +G +VAVK            REF  E+E+L  + H N+V L+G   E   R LVYE +PHG++  HLH
Sbjct:  506 QVFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHTNTREFETELEILCNIRHCNIVNLLGYSTEMGERLLVYEYMPHGTLHDHLH 608          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 39/100 (39.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            + + + ++  ATE FS ++++GEGG+G VY   +D+ T  AVK++  +     +EF+ EVE+LS+L H ++V L+G C E    CLVYE + +GS+E ++
Sbjct:  428 RKYTIEEIVTATEGFSPEKVIGEGGYGKVYQCSLDS-TPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLLLGACPE--NGCLVYEYLENGSLEEYI 524          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK13_ARATH (Cysteine-rich receptor-like protein kinase 13 OS=Arabidopsis thaliana GN=CRK13 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.286e-13
Identity = 40/105 (38.10%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  438 TCILSVKT--FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVE 746
            T I SV++  +    +E AT  FS +  LG GG G V+ G + +G E+AVK L+   +   +EF  EV ++++L HRNLV+L+G  ++G  + +VYE +P+ S++
Sbjct:  338 TGITSVRSLQYKFKTIETATNNFSER--LGHGGSGHVFKGRLPDGKEIAVKRLSEKTEQSKKEFKNEVVLVAKLQHRNLVRLLGFSVKGEEKIIVYEYLPNRSLD 440          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 39/103 (37.86%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  450 SVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            SV    LSDL KATE+F    I+  G  G +Y G +++G+ + +K L +++Q  ++EF AE++ L  + +RNLV L+G C+  + R L+YE + +G +   LH
Sbjct:  287 SVSKMKLSDLMKATEEFKKDNIIATGRTGTMYKGRLEDGSLLMIKRL-QDSQRSEKEFDAEMKTLGSVKNRNLVPLLGYCVANKERLLMYEYMANGYLYDQLH 388          
The following BLAST results are available for this feature:
BLAST of FC873428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
Y2242_ARATH2.591e-1441.67Probable LRR receptor-like serine/threonine-protei... [more]
PSKR1_ARATH2.591e-1441.28Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
Y4291_ARATH3.384e-1432.74Probable LRR receptor-like serine/threonine-protei... [more]
ACCR4_ARATH3.384e-1440.54Serine/threonine-protein kinase-like protein CCR4 ... [more]
CRK1_ARATH4.420e-1443.14Cysteine-rich receptor-like protein kinase 1 OS=Ar... [more]
IRAK1_MOUSE5.773e-1443.24Interleukin-1 receptor-associated kinase 1 OS=Mus ... [more]
ACCR1_ARATH5.773e-1440.78Serine/threonine-protein kinase-like protein CCR1 ... [more]
PUB34_ARATH1.286e-1339.00U-box domain-containing protein 34 OS=Arabidopsis ... [more]
CRK13_ARATH1.286e-1338.10Cysteine-rich receptor-like protein kinase 13 OS=A... [more]
Y5838_ARATH1.680e-1337.86Probably inactive leucine-rich repeat receptor-lik... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873428 ID=FC873428; Name=FC873428; organism=Citrus clementina; type=EST; length=787bp
TTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGAAA
GTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATCAG
CTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAGTG
GTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAAAT
AAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCTGC
ATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAAAT
GGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCATCA
TCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATTGC
TAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCTCT
CTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAATTC
AGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCATGG
TGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAATA
ATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCAGA
TTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGACG
CACGCGCTGCTTGGTGTATGAACTTGTTCCACATGGCAGTGTTGAGTCAC
ACCTGCATGGTGTTTGACAGAATAGAGGACCTCTTGA
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