FC873428

Overview
NameFC873428
Unique NameFC873428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10153 contig Ccv1_Contig10153:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 34/107 (31.78%), Postives = 59/107 (55.14%), Query Frame = 3 
Query:  444 ILSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDRE--FIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            + +VK F ++ L++ T  FS + ++G G  G VY   +  G   AV+ L + + N + E  F+  V  + R+ H N+V+L+G C E   R L++E   +G++   LH
Sbjct:  460 LTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLH 566
The following BLAST results are available for this feature:
BLAST of FC873428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
SRF1_ARATH7.803e-1131.78Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873428 ID=FC873428; Name=FC873428; organism=Citrus clementina; type=EST; length=787bp
TTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGAAA
GTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATCAG
CTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAGTG
GTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAAAT
AAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCTGC
ATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAAAT
GGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCATCA
TCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATTGC
TAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCTCT
CTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAATTC
AGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCATGG
TGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAATA
ATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCAGA
TTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGACG
CACGCGCTGCTTGGTGTATGAACTTGTTCCACATGGCAGTGTTGAGTCAC
ACCTGCATGGTGTTTGACAGAATAGAGGACCTCTTGA
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