FC873428

Overview
NameFC873428
Unique NameFC873428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10153 contig Ccv1_Contig10153:1..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  450 SVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMD----------NGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            ++K F  ++L+ AT  F    +LGEGGFG V+ G +D          +G  VAVK L      G +E++ EV  L +L H NLVKL+G C+EG  R LVYE +P GS+E+HL
Sbjct:   67 NLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHL 178          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.675e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  450 SVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMD----------NGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            ++K F  ++L+ AT+ F    +LGEGGFGCV+ G +D          +G  VAVK L      G +E++ EV  L +L H NLV L+G C EG  R LVYE +P GS+E+HL
Sbjct:   70 NLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHL 181          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  447 LSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            + V     S+L++AT+ F S  ++GEG +G VY+GV++N    A+K L  N Q  D EF+A+V M+SRL H N V+L+G C++G +R L YE   +GS+   LHG
Sbjct:   56 IEVPIIPFSELKEATDDFGSNSLIGEGSYGRVYYGVLNNDLPSAIKKLDSNKQP-DNEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILSYEFANNGSLHDILHG 159          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: WAKLL_ARATH (Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 45/101 (44.55%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            K F+  +LEKAT+ F+  R++G+GG G VY G++ +G  VAVK     +++  +EFI EV +LS+++HR++VKL+G C+E     LVYE +P+G++  HLH
Sbjct:  440 KLFSSRELEKATDNFNDNRVIGQGGQGTVYKGMLVDGRSVAVKKSNVVDEDKLQEFINEVIILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHLH 540          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  477 LEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            L+ AT+ FS +  LG GGFG VY GV   G E+AVK L+  +  GD EF  E+ +L++L HRNLV+L+G CIEG+ R LVYE + + S+++ +
Sbjct:  354 LKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFI 446          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: BRL2_ARATH (Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  453 VKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            ++    S L +AT  FS+  ++G GGFG V+   + +G+ VA+K L R +  GDREF+AE+E L ++ HRNLV L+G C  G  R LVYE + +GS+E  LHG
Sbjct:  823 LRKLKFSQLIEATNGFSAASMIGHGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKIGEERLLVYEFMQYGSLEEVLHG 925          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.564e-19
Identity = 46/101 (45.54%), Postives = 70/101 (69.31%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLH 758
            + F+  +LEKAT+ FS  RILG+GG G VY G++ +G  VAVK     +++   EFI EV +LS+++HR++VKL+G C+E     LVYE +P+G++  H+H
Sbjct:  437 RIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIH 537          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            + F+ S +   T  F  +RILG+GGFG VYHG ++   +VAVK+L+ ++  G ++F AEVE+L R+HH+NLV L+G C EG    L+YE + +G ++ H+ G
Sbjct:  566 RRFSYSQVVIMTNNF--QRILGKGGFGMVYHGFVNGTEQVAVKILSHSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDEGDNLALIYEYMANGDLKEHMSG 665          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHLHG 761
            + F   ++  AT KF    +LG GGFG VY G +++GT+VAVK     ++ G  EF  E+EMLS+L HR+LV LIG C E     LVYE + +G + SHL+G
Sbjct:  496 RCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYG 597          
BLAST of FC873428 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  477 LEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVPHGSVESHL 755
            +E AT KFS+   LGEGGFG VY G + NGT+VAVK L++ +  G REF  E  ++++L HRNLV+L+G C+E   + L+YE V + S++  L
Sbjct:  343 IEAATNKFSTSNKLGEGGFGAVYKGKLSNGTDVAVKRLSKKSGQGTREFRNEAVLVTKLQHRNLVRLLGFCLEREEQILIYEFVHNKSLDYFL 435          
The following BLAST results are available for this feature:
BLAST of FC873428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
APK2B_ARATH2.675e-1943.75Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK2A_ARATH2.675e-1943.75Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y2706_ARATH3.494e-1943.81Probable receptor-like protein kinase At2g47060 OS... [more]
WAKLL_ARATH3.494e-1944.55Putative wall-associated receptor kinase-like 13 O... [more]
CRK28_ARATH3.494e-1948.39Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
BRL2_ARATH3.494e-1945.63Serine/threonine-protein kinase BRI1-like 2 OS=Ara... [more]
WAKLK_ARATH4.564e-1945.54Putative wall-associated receptor kinase-like 11 O... [more]
Y5182_ARATH5.960e-1944.12Probable LRR receptor-like serine/threonine-protei... [more]
THE1_ARATH5.960e-1946.08Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
CRK11_ARATH5.960e-1948.39Cysteine-rich receptor-like protein kinase 11 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CA12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873428 ID=FC873428; Name=FC873428; organism=Citrus clementina; type=EST; length=787bp
TTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGAAA
GTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATCAG
CTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAGTG
GTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAAAT
AAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCTGC
ATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAAAT
GGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCATCA
TCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATTGC
TAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCTCT
CTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAATTC
AGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCATGG
TGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAATA
ATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCAGA
TTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGACG
CACGCGCTGCTTGGTGTATGAACTTGTTCCACATGGCAGTGTTGAGTCAC
ACCTGCATGGTGTTTGACAGAATAGAGGACCTCTTGA
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