FC873444

Overview
NameFC873444
Unique NameFC873444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873444 vs. ExPASy Swiss-Prot
Match: PP408_ARATH (Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 43/154 (27.92%), Postives = 76/154 (49.35%), Query Frame = 3 
Query:  102 EAIDYFGRLPDFGLRPNVAVYTALIDGLCKKNCIERARNLFDEMLKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELHNEMMGRGL 563
            +AI  F RL   G+ P++  Y ++I+   K      AR L  EM +  ++P+T +Y+ L+  Y+++  F EAL++   M EV   LDL     ++    +   ++EA  LF  +    I P+ +   ++L+ + E     EAI L   M  + +
Sbjct:  243 KAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDI 396
The following BLAST results are available for this feature:
BLAST of FC873444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PP408_ARATH9.604e-1127.92Pentatricopeptide repeat-containing protein At5g39... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CC07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873444 ID=FC873444; Name=FC873444; organism=Citrus clementina; type=EST; length=570bp
CCCTCGTGCTGCAAGATGAAGTGTTGGACTCCATAATTGAGGTTACAGTT
GTGACATTTTGTGTATTAATTGATGGTTTGTGCAAAAATGGACTGGTCCG
AGAAGCAATTGATTATTTTGGTAGGTTGCCAGATTTTGGTTTGCGTCCGA
ATGTTGCTGTATATACAGCCCTGATTGATGGTCTTTGTAAGAAAAATTGC
ATTGAAAGAGCCAGAAATTTGTTTGATGAAATGCTCAAGAGAGATATGAT
TCCTGATACAACTGCGTACACCGCTCTGATAGATGGATACTTGAAGCATG
AAAGTTTTAAGGAAGCTTTGAATTTGAAAAATAGAATGACTGAAGTTGGT
GTGGATCTTGATCTGAATGCCTACACTTCCTTAGTTTGGGGGCTTTCTCG
ATGCGGTCATCTGCAGGAAGCAAGAGTGTTATTTCATGAGATGATTGGCA
GGGGGATCCTTCCTGATGAGATTCTATGTATCTCTCTATTAAAGAAGCAT
TATGAGCGAGGAAATATGGATGAAGCAATTGAATTGCACAATGAAATGAT
GGGAAGGGGTCTGTTGTCTG
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