FC873448

Overview
NameFC873448
Unique NameFC873448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_ALKOO (ATP synthase subunit beta OS=Alkaliphilus oremlandii (strain OhILAs) GN=atpD PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.648e-58
Identity = 109/174 (62.64%), Postives = 137/174 (78.74%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +G++G++ Q+IG V+D+RF  E LP +L A+E+     ++V+EV+QH+G+  VR +AM  T+GLVRG    +TG PITVPVGR TLGRI NVIGEP+DEKG +  E   PIHR AP+F +QAT  +IL TGIKVVDL+APY +GGKIGLFGGAGVGKTVLIMELINN+AK HGG
Sbjct:    3 EGNVGKLVQIIGPVIDIRFSRENLPNLLNAIEIEGPDGKIVVEVSQHIGDDTVRCVAMKSTDGLVRGMEAKDTGGPITVPVGRATLGRIFNVIGEPVDEKGAVAAEAKAPIHRPAPSFEDQATSTEILETGIKVVDLIAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKEHGG 176          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RICTY (ATP synthase subunit beta OS=Rickettsia typhi GN=atpD PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.134e-57
Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR I+M  TEGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:    4 NIGKITQVISAVVDVKFTNNSKLPEILNALECYNAKQRIVLEVAQHIGDDTVRCISMGSTEGLIRGLEVIDTGNPIHIPVGIATLGRIMNVVGEPIDGKGEIKSSTISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 176          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_CAUCR (ATP synthase subunit beta OS=Caulobacter crescentus GN=atpD PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.134e-57
Identity = 111/175 (63.43%), Postives = 138/175 (78.86%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +G+ G++ Q+IGAVVD+ FD  LP IL A+E V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGEPIDE+G ++++    IHR+AP+F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGVGKTV + ELINN+AKA+GG
Sbjct:   61 EGATGRLVQIIGAVVDIEFDGALPAILNAVETVNTATGQRLVFEVAQHLGQSTVRAIAMDATEGLVRGQPVRDTGEPIRVPVGPGTLGRIMNVIGEPIDEQGPIRSDISRTIHRDAPSFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGG 235          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.934e-57
Identity = 108/169 (63.91%), Postives = 130/169 (76.92%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G + Q+I AVVD+ F + LP I  AL+V      LVLEV QH+G  VVRT+AMD T+GL RG  V++TG PIT+PVG+  LGRI+NV+GEP+D +G L  E +LPIHREAP F +  TE +I  TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK HGG
Sbjct:    4 GTITQIISAVVDIAFKDELPAIYNALKVKLEDKELVLEVEQHLGNNVVRTVAMDSTDGLKRGMEVIDTGKPITIPVGKAVLGRILNVLGEPVDNQGPLNAETFLPIHREAPEFDDLETETEIFETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIMELINNIAKGHGG 172          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_GEOLS (ATP synthase subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=atpD PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.526e-57
Identity = 117/177 (66.10%), Postives = 136/177 (76.84%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +IG++ QVIGAV+DV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ V++TG  I  PVGR TLGRIMNVIGEP+DE G +  E    IHREAPAF +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK HGG
Sbjct:    4 NIGKISQVIGAVIDVEFEPGKLPEIYHALRVTNPAIDDRENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVIDTGKQICAPVGRKTLGRIMNVIGEPVDEMGPIGNEKEYGIHREAPAFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGG 180          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.309e-57
Identity = 115/173 (66.47%), Postives = 132/173 (76.30%), Query Frame = 3
Query:  276 KGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            K   G++ Q++G VVDV+F+  LP IL ALE      RLVLEVAQ +GE  VR IAMD T+GL RG  V +TG  I VPVG  TLGRI+NVIGEPIDE+G + T    PIHR+AP+F EQAT  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG
Sbjct:    3 KNVTGRITQIMGPVVDVQFEGELPYILNALETRVGDRRLVLEVAQEIGERTVRCIAMDSTDGLARGDEVRDTGEAIAVPVGPETLGRILNVIGEPIDERGPIPTTRTAPIHRQAPSFDEQATSAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKGHGG 175          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_DESDA (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=atpD PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.599e-57
Identity = 109/176 (61.93%), Postives = 138/176 (78.41%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +IG++ QVIGAVVDV F +G LP I TALE+ +     +  L+ EVAQH+G+ VVRTIAMD TEGLVRG   ++TG PI VPVG+ ++GRI+NVIG P+DE G +  E Y PIHR APAF +Q T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK HGG
Sbjct:    4 NIGKIVQVIGAVVDVEFSDGNLPNIFTALEIKNPNNTDAPELICEVAQHLGDNVVRTIAMDATEGLVRGMDAVDTGQPIMVPVGKPSVGRILNVIGRPVDEMGPINAEKYYPIHRPAPAFTDQNTKVELLETGIKVVDLLVPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQHGG 179          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_CAUSK (ATP synthase subunit beta OS=Caulobacter sp. (strain K31) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.254e-56
Identity = 113/177 (63.84%), Postives = 135/177 (76.27%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T +   G++ QVIGAVVDV F   LP IL ALE V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG  I VPVG  TLGRIMNVIGEPIDE+G +K++ +  IHR+AP F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGVGKTV + ELINN+AKA+GG
Sbjct:   63 TIRAGTGKLVQVIGAVVDVEFTGELPAILNALETVNIATGQRLVFEVAQHLGQNTVRAIAMDATEGLVRGQEVRDTGQSIRVPVGPGTLGRIMNVIGEPIDEQGPIKSDIFRTIHRDAPTFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELINNIAKAYGG 239          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_PROMO (ATP synthase subunit beta, sodium ion specific OS=Propionigenium modestum GN=atpD PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.637e-56
Identity = 108/170 (63.53%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G + Q+IG VVDV F+  LP I  AL++   +   LV EV QH+G  VVR +AMD T+GL RG  V++TG  ITVPVG+  LGRI+NV+GEP+DE G++K E Y PIHREAPAF +Q TE+++  TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+A+ HGG
Sbjct:    5 GVITQIIGPVVDVTFENELPRIYNALKIDRGNGEYLVAEVQQHLGNSVVRAVAMDATDGLQRGMEVVDTGPAITVPVGKAVLGRILNVLGEPVDEAGEVKAEEYAPIHREAPAFEDQGTEKEVFETGIKVVDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNIAQGHGG 174          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.637e-56
Identity = 114/171 (66.67%), Postives = 133/171 (77.78%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            ++G+V Q++GAVVDV+FD  LP I  AL+       L+LEVAQ +GE  VR IAMD T+GLVRG  V + G PITVPVG  TLGRI+NVIGEPIDE+G +  +    IHREAP+F EQA   +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AKAHGG
Sbjct:    5 NVGRVTQILGAVVDVQFDGELPFIQNALQTRIGDRTLILEVAQELGERTVRAIAMDSTDGLVRGAEVEDLGRPITVPVGPGTLGRILNVIGEPIDERGPVDAKKTYSIHREAPSFEEQAASAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELINNIAKAHGG 175          
The following BLAST results are available for this feature:
BLAST of FC873448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_ALKOO6.648e-5862.64ATP synthase subunit beta OS=Alkaliphilus oremland... [more]
ATPB_RICTY1.134e-5765.90ATP synthase subunit beta OS=Rickettsia typhi GN=a... [more]
ATPB_CAUCR1.134e-5763.43ATP synthase subunit beta OS=Caulobacter crescentu... [more]
ATPB_FUSNN1.934e-5763.91ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_GEOLS2.526e-5766.10ATP synthase subunit beta OS=Geobacter lovleyi (st... [more]
ATPB_ACICJ4.309e-5766.47ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB_DESDA9.599e-5761.93ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB_CAUSK1.254e-5663.84ATP synthase subunit beta OS=Caulobacter sp. (stra... [more]
ATPB_PROMO1.637e-5663.53ATP synthase subunit beta, sodium ion specific OS=... [more]
ATPB_GRABC1.637e-5666.67ATP synthase subunit beta OS=Granulibacter bethesd... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873448 ID=FC873448; Name=FC873448; organism=Citrus clementina; type=EST; length=795bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGGTGGTT
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