FC873448

Overview
NameFC873448
Unique NameFC873448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:11..805. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_AGRT5 (ATP synthase subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpD PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.615e-65
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 3 
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+V QVIGAVVDV F+  LPPIL ALE  ++  RLVLEVAQH+GE VVRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G + T     IH++AP++VEQ+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   17 GKVTQVIGAVVDVAFEGELPPILNALETQNNGNRLVLEVAQHLGENVVRTIAMDSTEGLVRGQSVADTGAPIEVPVGLETLGRIMNVIGEPVDEAGPIVTAKKRAIHQDAPSYVEQSTEGQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 185
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_HYPNA (ATP synthase subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpD PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.577e-65
Identity = 122/169 (72.19%), Postives = 141/169 (83.43%), Query Frame = 3 
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G++ QVIGAVVDV FD  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V + G+PITVPVG  TLGRIMNVIGEPIDE+G +  + Y+PIH +APAFV+QATE ++LVTGIKV+DLL PY +GGKIGLFGGAGVGKTVLIMEL+NN+AK  GG
Sbjct:    9 GRISQVIGAVVDVEFDGELPSILNALETFNNGSRLVLEVAQHLGENTVRTIAMDSTEGLVRGQPVSDIGTPITVPVGPATLGRIMNVIGEPIDERGPVNADTYMPIHAQAPAFVDQATESEVLVTGIKVIDLLCPYAKGGKIGLFGGAGVGKTVLIMELVNNIAKLFGG 177
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_OCHA4 (ATP synthase subunit beta OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 126/173 (72.83%), Postives = 145/173 (83.82%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G++G++ QVIGAVVDV+F++G LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G +KT     IH+EAP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   46 GAVGKITQVIGAVVDVQFEDGQLPLILNALETDNLGSRLVLEVAQHLGENTVRTIAMDSTEGLVRGHEVRDTGNPIMVPVGEETLGRIMNVIGEPVDEAGPIKTTARRAIHQEAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 218
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSU (ATP synthase subunit beta OS=Brucella suis GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSI (ATP synthase subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUO2 (ATP synthase subunit beta OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUME (ATP synthase subunit beta OS=Brucella melitensis GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUC2 (ATP synthase subunit beta OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUAB (ATP synthase subunit beta OS=Brucella abortus GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
[Close]
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRUA2 (ATP synthase subunit beta OS=Brucella abortus (strain 2308) GN=atpD PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.787e-64
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 3 
Query:  279 GSIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+IG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 222
The following BLAST results are available for this feature:
BLAST of FC873448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_AGRT55.615e-6575.74ATP synthase subunit beta OS=Agrobacterium tumefac... [more]
ATPB_HYPNA9.577e-6572.19ATP synthase subunit beta OS=Hyphomonas neptunium ... [more]
ATPB_OCHA42.787e-6472.83ATP synthase subunit beta OS=Ochrobactrum anthropi... [more]
ATPB_BRUSU2.787e-6473.99ATP synthase subunit beta OS=Brucella suis GN=atpD... [more]
ATPB_BRUSI2.787e-6473.99ATP synthase subunit beta OS=Brucella suis (strain... [more]
ATPB_BRUO22.787e-6473.99ATP synthase subunit beta OS=Brucella ovis (strain... [more]
ATPB_BRUME2.787e-6473.99ATP synthase subunit beta OS=Brucella melitensis G... [more]
ATPB_BRUC22.787e-6473.99ATP synthase subunit beta OS=Brucella canis (strai... [more]
ATPB_BRUAB2.787e-6473.99ATP synthase subunit beta OS=Brucella abortus GN=a... [more]
ATPB_BRUA22.787e-6473.99ATP synthase subunit beta OS=Brucella abortus (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873448 ID=FC873448; Name=FC873448; organism=Citrus clementina; type=EST; length=795bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGGTGGTT
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