FC873448

Overview
NameFC873448
Unique NameFC873448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.863e-63
Identity = 124/175 (70.86%), Postives = 139/175 (79.43%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T  G IG V QVIGAVVDV+F E LP IL ALE  +   RLVLEVAQH+GE  VR IAMD T+GLVRGQ V +TG+PI+VPVG   LGRI+NVIGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:   46 TASGKIGSVRQVIGAVVDVQFQENLPAILNALETDNQGNRLVLEVAQHLGENTVRCIAMDSTDGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 220          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB1_BRASB (ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.863e-63
Identity = 123/175 (70.29%), Postives = 142/175 (81.14%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T    IG++ QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K +    IH+EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:    3 TAANQIGRITQVIGAVVDVQFEGHLPAILNSLETKNAGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADSLRAIHQEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 177          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63
Identity = 120/171 (70.18%), Postives = 138/171 (80.70%), Query Frame = 3
Query:  282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            ++G++ QVIGAVVDV FD  LP IL ALE  ++  RLVLEVAQH+GEG VRTIAMD T+GL RGQ V +TGS I VPVG  TLGRI+NVIGEPIDE+G +      PIH EAP FV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG
Sbjct:    9 NVGRISQVIGAVVDVSFDGSLPAILNALETTNNGNRLVLEVAQHLGEGTVRTIAMDATDGLTRGQEVTDTGSQIRVPVGPQTLGRILNVIGEPIDERGPVNATQTSPIHAEAPLFVDQSTDASILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGG 179          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63
Identity = 124/175 (70.86%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T     G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGIGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 177          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63
Identity = 121/180 (67.22%), Postives = 146/180 (81.11%), Query Frame = 3
Query:  255 ITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +  E   KG++G++ QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GL+RGQ+V++TG+ I+VPVG  TLGRIMNVIGEP+D  G + +     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAHGG
Sbjct:   58 VKKEERAKGTVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELINNIAKAHGG 237          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.171e-62
Identity = 124/169 (73.37%), Postives = 140/169 (82.84%), Query Frame = 3
Query:  288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            G+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRI+NVIGEPIDE G +K+E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:    6 GRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 174          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.529e-62
Identity = 122/170 (71.76%), Postives = 139/170 (81.76%), Query Frame = 3
Query:  285 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            +G++ QVIGAVVDV+FD  LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G ++ E    IH+ AP++ EQATE +ILVTGIKVVDLLAPY +GGK+GLFGGAGVGKTVLIMELINNVAKAHGG
Sbjct:    5 VGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELINNVAKAHGG 174          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.529e-62
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T     G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAVETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 177          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.529e-62
Identity = 123/175 (70.29%), Postives = 140/175 (80.00%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T     G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:    3 TPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 177          
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_BRASO (ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=atpD PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.529e-62
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 3
Query:  270 TGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794
            T    IG+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K ++   IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELINNVAKAHGG
Sbjct:    3 TAANQIGRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADNVRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAKAHGG 177          
The following BLAST results are available for this feature:
BLAST of FC873448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_MESSB6.863e-6370.86ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB1_BRASB6.863e-6370.29ATP synthase subunit beta 1 OS=Bradyrhizobium sp. ... [more]
ATPB_SPHWW8.964e-6370.18ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_RHOPS8.964e-6370.86ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_BART18.964e-6367.22ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB_BRAJA1.171e-6273.37ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_XANP21.529e-6271.76ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_RHOPB1.529e-6270.29ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP21.529e-6270.29ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_BRASO1.529e-6270.29ATP synthase subunit beta OS=Bradyrhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873448 ID=FC873448; Name=FC873448; organism=Citrus clementina; type=EST; length=795bp
TTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCCTATCA
TCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCGTTTTC
TAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCCTTATG
GGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCGCCACT
GCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGCGGTGG
TAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGTTTGTC
AGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGCCTCCG
ATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTGCTTGA
GGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTATGGATG
GAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCTCTCCA
ATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAATGTCAT
TGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTACTTGC
CCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAACAACAG
ATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATACCAAAG
AGGAGGGAAGATTGGGCTTTTTGGTGGTGCTGGTGTAGGAAAAACTGTGC
TTATTATGGAACTTATTAACAATGTTGCAAAGGCTCATGGTGGTT
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