FC873448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RHOBL (ATP synthase subunit beta OS=Rhodopseudomonas blastica GN=atpD PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 6.013e-59 Identity = 114/171 (66.67%), Postives = 136/171 (79.53%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 S G+V QVIGAVVDV+F+ LP IL ALE ++ +L+LEVAQH+GE VR IAMD TEGLVRG V ++G+PI+VPVG TLGRI+NV+GEPIDE+G + IH++AP F Q+TE QILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK H G Sbjct: 8 SKGKVTQVIGAVVDVQFEGVLPAILNALETTNNGKKLILEVAQHLGENTVRCIAMDATEGLVRGAPVSDSGTPISVPVGNATLGRILNVVGEPIDERGPIAATEKRAIHQKAPDFQSQSTESQILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIQELINNIAKVHSG 178
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_GEOUR (ATP synthase subunit beta OS=Geobacter uraniireducens (strain Rf4) GN=atpD PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 6.013e-59 Identity = 118/177 (66.67%), Postives = 139/177 (78.53%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 +IG++ QVIGAV+DV F+ G LPPI AL V + S+ LVLEVAQH+GE VRTIAMD T+GLVRGQ ++TG I+VPVGR TLGRI+NVIG+P+DE G + E IHREAPAFV+Q+T+ + TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+A HGG Sbjct: 4 NIGKISQVIGAVIDVEFEPGKLPPIYNALRVTNPSIDDKENNLVLEVAQHLGENSVRTIAMDSTDGLVRGQAAIDTGKQISVPVGRKTLGRILNVIGDPVDEMGPVGAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAMQHGG 180
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_SILST (ATP synthase subunit beta OS=Silicibacter sp. (strain TM1040) GN=atpD PE=3 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 7.853e-59 Identity = 112/169 (66.27%), Postives = 136/169 (80.47%), Query Frame = 3 Query: 288 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 G+V Q+IGAVVDV+FD LP IL AL ++ +LVLEVAQH+GE VRTIAMD TEGLVRGQ V +TG+PI++PVG TLGRI+NV+GEP+DE + + IH+ AP F +Q+TE ++LVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AK H G Sbjct: 6 GKVTQIIGAVVDVQFDGELPAILNALTTDNNGKKLVLEVAQHLGENSVRTIAMDATEGLVRGQEVTDTGAPISIPVGNATLGRILNVVGEPVDEGEPIVAKETRAIHQPAPEFNDQSTESEVLVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKVHSG 174
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RICCN (ATP synthase subunit beta OS=Rickettsia conorii GN=atpD PE=3 SV=2) HSP 1 Score: 226.483 bits (576), Expect = 1.339e-58 Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 +IG++ Q+I AVVDV+F LP IL ALE + R+VLEVAQH+G+ VR IAMD EGLVRG V++TGSPI +PVG TLGRIMNV+GEPID KGD+K+ + I++ AP F Q+TE ILVTGIKV+DLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG Sbjct: 4 NIGKITQIISAVVDVKFTNNGELPKILNALECYNDKQRIVLEVAQHIGDDTVRCIAMDSMEGLVRGVEVIDTGSPIRIPVGTETLGRIMNVVGEPIDGKGDIKSSNISSIYKPAPDFTHQSTECNILVTGIKVIDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 176
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSM (ATP synthase subunit beta OS=Geobacter sp. (strain M21) GN=atpD PE=3 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.339e-58 Identity = 118/177 (66.67%), Postives = 136/177 (76.84%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 + G++ QVIGAV+DV F+ G LPPI AL V D LVLEVAQH+GE VRTIAMD T+GLVRGQ+V + G I+VPVG+ TLGRI+NVIGEP+DE G + E IHREAPAFV Q+T+ + TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK HGG Sbjct: 4 NFGKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPAFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGG 180
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RICBR (ATP synthase subunit beta OS=Rickettsia bellii (strain RML369-C) GN=atpD PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.285e-58 Identity = 115/175 (65.71%), Postives = 140/175 (80.00%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 K +IG++ Q+I AVVDV+F LP IL ALE + R+VLE+AQH+G+ VR IAM+ TEGLVRG V++TGSPI++PVG TLGRIMNV+GEPID KG +K I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG Sbjct: 2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 176
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.285e-58 Identity = 115/175 (65.71%), Postives = 140/175 (80.00%), Query Frame = 3 Query: 276 KGSIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 K +IG++ Q+I AVVDV+F LP IL ALE + R+VLE+AQH+G+ VR IAM+ TEGLVRG V++TGSPI++PVG TLGRIMNV+GEPID KG +K I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG Sbjct: 2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 176
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_DESVM (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=atpD PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 2.285e-58 Identity = 112/176 (63.64%), Postives = 141/176 (80.11%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 +IG++ QVIGAVVDV F G LP IL+AL++ + + +LV EVAQH+G+ VVRTIAMD TEGLVRG ++TG PI VPVG+ +LGRIMNV+G P+DE G +KT+ YLPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGVGKTV++ME+INN+AK HGG Sbjct: 4 NIGKIVQVIGAVVDVEFPSGNLPNILSALDIKNPNNSDAPQLVCEVAQHLGDNVVRTIAMDATEGLVRGMEAVDTGKPIMVPVGKASLGRIMNVVGRPVDEMGPIKTDKYLPIHRPAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMINNIAKQHGG 179
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_GEOBB (ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 5.090e-58 Identity = 117/177 (66.10%), Postives = 135/177 (76.27%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 + G++ QVIGAV+DV F+ G LPPI AL V D LVLEVAQH+GE VRTIAMD T+GLVRGQ+V + G I+VPVG+ TLGRI+NVIGEP+DE G + E IHREAP FV Q+T+ + TGIKVVDLLAPY RGGKIGLFGGAGVGKTVLIMELINN+AK HGG Sbjct: 4 NFGKISQVIGAVIDVEFEPGKLPPIYQALRVTNPAIDDQEFNLVLEVAQHLGENAVRTIAMDSTDGLVRGQQVKDMGKQISVPVGKKTLGRILNVIGEPVDEMGPIGNEKEYGIHREAPLFVNQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIAKQHGG 180
BLAST of FC873448 vs. ExPASy Swiss-Prot
Match: ATPB_RICCK (ATP synthase subunit beta OS=Rickettsia canadensis (strain McKiel) GN=atpD PE=3 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 6.648e-58 Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = 3 Query: 282 SIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 794 +IG++ Q+I AVVDV+F LP IL ALE + R+VLEV QH+G+ VR IAMD TEGLVRG V++TGSPI +PVG TLGRIMNV+GE ID KG++K+ + I++ AP+F Q++E+ ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG Sbjct: 4 NIGKITQIISAVVDVKFTNNSKLPAILNALECYSDNQRIVLEVVQHIGDDTVRCIAMDSTEGLVRGLEVVDTGSPICIPVGTATLGRIMNVVGESIDGKGEIKSSNVSSIYKPAPSFTNQSSERTILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 176 The following BLAST results are available for this feature:
BLAST of FC873448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873448 ID=FC873448; Name=FC873448; organism=Citrus clementina; type=EST; length=795bpback to top |