FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.969e-32
Identity = 62/105 (59.05%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            G+ Y+GG+FFLDITF  DYPFKPPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ +  +P+V  IA  Y+ ++A+HD++A +WT R+A
Sbjct:   96 GSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.969e-32
Identity = 62/105 (59.05%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            G+ Y+GG+FFLDITF  DYPFKPPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ +  +P+V  IA  Y+ ++A+HD++A +WT R+A
Sbjct:   96 GSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PYQGG+FFL I FPTDYPFKPPKVAF TRIYH N++S G++ LDIL+  WSPALTI+KVLL++ S+  +P+  +P+VP IA +Y  D+ K++++A EWT ++A
Sbjct:   43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 59/104 (56.73%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PY GG+FFL I FPTDYPFKPPK++F T+IYH N+++ GN+ LDILKD WSPALT++KVLL++ S+ T+ +  +P+VP IAH+Y  D+ K++  A EWT ++A
Sbjct:   44 SPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 62/104 (59.62%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PY GG+FFL I FPTDYPFKPPKV F TRIYH N++S G++ LDIL+D WSPALTI+KVLL++ SM T+P+  +P+VP IAH+Y   +A+++  A EWT ++A
Sbjct:   43 SPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYA 146          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +PY GG+FFL I FPTDYP KPPK+A  T+IYH N++S GN+ LDILKD WSPALTI+KVLL++ S+ T+ +  +P+VP IAH+Y +D+ K++  A EWT ++A
Sbjct:   43 SPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2E2_MOUSE1.969e-3259.05Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.969e-3259.05Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2D2_XENLA2.571e-3258.65Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT2.571e-3258.65Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE2.571e-3258.65Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN2.571e-3258.65Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN2.571e-3258.65Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_YEAST3.358e-3256.73Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_MAGGR3.358e-3259.62Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC4_CANAL4.386e-3257.69Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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