FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 1
Query:   10 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSP---ALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            YQGG++ + +     YP+K P + F  +IYH NVD  +G+V LD++  +WSP    + I +V L    ++ NPS  +P+    A L + DK  ++    E+  R+AK
Sbjct:   44 YQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPS--DPLNGEAASLMMRDKNAYENKVKEYCERYAK 148          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   10 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            Y+   F L+I    DYP+  PKV F+T I H NV+  G++ L+IL KD W+ +L I  ++ ++  +   P+  +P    +A LY  DK  +D+   ++    +K
Sbjct:   51 YENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRDYCKTHSK 154          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   10 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            Y+GG F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   71 YKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   10 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            Y+GG F         YP  PPKV   T +YH N+D  GNV L+IL++ W P LTI  ++  ++ +F  P+  +P+    A +   ++   +Q
Sbjct:   71 YKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 162          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 267
            GTPY  GIF + +    D+P  PPK  FLT+I+H NV + G + +++LK  W   L I  VLL ++ +  +P+  + +      L LE+
Sbjct:   52 GTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 303
            GTPY  GIF + +T   D+P  PPK  FLT+I+H NV   G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   55 GTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 303
            GTPY  GIF + +T   D+P  PPK  FLT+I+H NV   G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   55 GTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2S_DROWI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila willistoni GN=GK16201 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 303
            GTPY  G+F + +T   D+P  PPK  FLT+I+H NV + G + ++ LK  W P L I  +LL ++ +   P+  + +      + LE    + Q A   T
Sbjct:   55 GTPYAIGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMT 155          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC4_WHEAT5.574e-1134.58Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC1_MIMIV5.574e-1132.69Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UBC12_XENTR5.574e-1133.70NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA5.574e-1133.70NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UB2SC_XENLA5.574e-1135.96Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBE2S_DROPS7.280e-1134.65Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE7.280e-1134.65Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROWI9.508e-1133.66Ubiquitin-conjugating enzyme E2 S OS=Drosophila wi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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