FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            G+P++ G+F +DI  P DYPFKPP + F T+IYH N+ ++       +  +WSP L I  VL  +RS+ T+P+  NP+   IA  +  D+   ++ A EWT ++AK
Sbjct:   43 GSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK 148          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.149e-18
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   10 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            Y+GG F L++  P +YP  PP V FLT+IYH NVD  G + L  LK  WSPAL I  VLL+++++   P+  +P+   +A ++ E++ +    A EWT ++A
Sbjct:   46 YEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            TPY+ G+F L++  P  YPF+PP++ FLT IYH N+DSAG + LD+L    K +W P+L I  VL +++ + + P+  +P++  I+  +  +K    + A +WT + A+
Sbjct:   44 TPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 152          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            +P++GG F  ++    +YP   PKV F+T+IYH NVD    ++LDILKD WSPAL I  VLL+++++   P+  +P+   +   +  ++A+  + A  WT  +A
Sbjct:   46 SPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            TPY+ G+F L++  P  YPF+PP+V FLT IYH N+DS+G + LDIL    K +W P+L I  VL +++ +   P+  +P++  I+  +  +K    + A +WT   A+
Sbjct:   44 TPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHAR 152          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   10 YQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDS-WSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            Y GG F   + FP DYPF+PP + F TRIYH N DS GNV L ILK   + P++ +  VL  +  +   P+  +P+V  IA  Y  D+   D++A ++  +FAK
Sbjct:   51 YAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFAK 154          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            TPY+ G+F L++  P  YPF+PP++ FLT IYH N+DSAG + LD+L    K +W P+L I  +L  ++ +   P+  +P++  I+  +  +K    + A +WT + A+
Sbjct:   44 TPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHAR 152          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 37/105 (35.24%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 PYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 37/105 (35.24%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 PYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 37/105 (35.24%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 PYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBCB_DICDI7.263e-1939.62Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC13_SCHPO6.149e-1841.18Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2T_HUMAN2.337e-1737.61Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UE2NL_HUMAN5.205e-1737.50Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2T_MOUSE5.205e-1738.53Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC14_SCHPO5.205e-1741.35Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2T_BOVIN6.798e-1736.70Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UB2L3_PONAB1.282e-1535.24Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE1.282e-1535.24Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN1.282e-1535.24Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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