FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 37/105 (35.24%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 PYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            PY  G F ++I FP +YPFKPPK+ F T+IYH N+D  G V L ++  ++W PA    +V+ ++ ++  +P   +P+   +A  Y +D+ K  + A E+T ++ +
Sbjct:   45 PYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQL---AAEWTLRFA 315
            TPY+GG F L+I  P  YPF PPKV F+TRI+H N+ S  G + LDILKD+W+ A+T+  VLL+++++       +P    +A+ +   K K+D     A  WT  +A
Sbjct:   49 TPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQF---KDKYDLFLLTAKHWTNAYA 153          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            TPY+GG + L+I  P  YPF PPKV F+T+I+H N+ S  G + LDILKD W+ A+T+  VLL+++++       +P    +A+ Y ++     Q A  W   +A
Sbjct:   49 TPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            TPY+GG + L+I  P  YPF PPKV F+T+I+H N+ S  G + LDILKD W+ A+T+  VLL+++++       +P    +A+ Y ++     Q A  W   +A
Sbjct:   49 TPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            TPY+GG + L+I  P  YPF PPKV F+T+I+H N+ S  G + LDILKD W+ A+T+  VLL+++++       +P    +A+ Y ++     Q A  W   +A
Sbjct:   49 TPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V FL++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V FL++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V FL++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V FL++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V FL++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UB2L3_BOVIN1.282e-1535.24Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBCD4_DROME1.674e-1541.67Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBE2K_MOUSE2.187e-1539.05Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN2.187e-1539.05Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN2.187e-1539.05Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2B_RAT2.856e-1537.89Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.856e-1537.89Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.856e-1537.89Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN2.856e-1537.89Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.856e-1537.89Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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