FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V F+++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 35/95 (36.84%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            GTP++ G F L I F  +YP KPP V F+++++H NV + G++ LDIL++ WSP   ++ +L +++S+   P+ ++P     A LY E+K ++++
Sbjct:   45 GTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 297
            TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  +L +++S+  +P+ ++P     A +Y E+K ++++   E
Sbjct:   46 TPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 258
            T Y+   F + + FPTDYP+KPP V F T+ +H NVD+ GN+ LDILKD WSP   +  +L++++S+   P+  +P+    A L+
Sbjct:   48 TVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW 132          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 37/105 (35.24%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH-----DQLAAEWT 303
            TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  +L +++S+  +P+ ++P     A +Y E K ++     D +   WT
Sbjct:   46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            T Y  GIF L I  P  YPF+PP V+F T IYH N+D++G + LDIL    K +W P+L I+ VL ++R + + P+  + ++  ++  Y  ++   D  A E T ++AK
Sbjct:   57 TVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYAK 165          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 34/98 (34.69%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 297
            TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  +L +++S+  +P+ ++P     A ++ E+K ++++   E
Sbjct:   46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVA---------------FLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 315
            GTPY GG F + +  P  YPF+PPKV                F+TRI+H N+ S  G + LDILKD W+ +LT+  VLL++++M  +P   +P    +A  ++ +       A  WT  FA
Sbjct:   62 GTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWTSYFA 182          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 34/98 (34.69%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 297
            TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  +L +++S+  +P+ ++P     A ++ E K ++++   E
Sbjct:   46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVRE 143          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQ 285
            TP++ G F L I F  +YP KPP V F+++++H NV + G + LDIL++ WSP   ++ +L +++S+ ++P+ ++P     A LY E++ ++++
Sbjct:   46 TPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEK 139          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBE2A_MOUSE3.730e-1536.84Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.730e-1536.84Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_WHEAT3.730e-1535.71Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2C_DICDI4.872e-1542.35Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC1_ARATH4.872e-1535.24Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC37_ARATH8.310e-1538.53Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC2_MEDSA8.310e-1534.69Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC21_CAEEL8.310e-1536.36Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBC2_ARATH1.085e-1434.69Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME1.851e-1435.11Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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