FC873451

Overview
NameFC873451
Unique NameFC873451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    7 PYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 318
            PY  G F ++I FP  YPF PPK+ F T+IYH NVD  G V L I+  D+W P     +VL A+ ++  NP   +P+   +A  ++ +  K  + A E+T + A+
Sbjct:   45 PYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNAE 149          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 297
            TP+ GG F L + F  DYP KPP V F++R++H N+ + G++ LDIL++ WSP   +  VL +++S+  +P+  +P     A L+ E+K ++++   E
Sbjct:   46 TPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIE 143          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 258
            T ++G  + L ++F  DYPFKPPKV F T  +H NVD  GN+ LDIL+D WS A  +  +LL+++S+   P++ +P+    A L+
Sbjct:   77 TVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW 161          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKH 279
            TPY G  F + + FP +YPF PP + FL+ ++H NVD +GN+ LDILK+ WS    +  +LL+++S+   P+  +P+    A L+  D  ++
Sbjct:   51 TPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 34/95 (35.79%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQL 288
            T Y+G  F + ++FP +YP+ PP + F + ++H NVD +GN+ LDILKD WS    +  +LL+++S+   P+  +P+    A L+ +D  ++ +L
Sbjct:   71 TYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRL 165          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 258
            T ++G  + L +TF  DYPFK PKV F T  +H NVD  GN+ LDIL+D WS A  +  +LL+++S+   P++ +P+    A L+
Sbjct:   78 TVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW 162          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 258
            GT Y+   + L + FP+ YP+  P V FLT  YH NVD+ GN+ LDILKD WS    +  +LL+++S+   P++ +P+    A L+
Sbjct:   71 GTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 258
            GT Y+   + L + FP+ YP+  P V FLT  YH NVD+ GN+ LDILKD WS    +  +LL+++S+   P++ +P+    A L+
Sbjct:   71 GTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 GTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 258
            GT Y+   + L + FP+ YP+  P V FLT  YH NVD+ GN+ LDILKD WS    +  +LL+++S+   P++ +P+    A L+
Sbjct:   71 GTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of FC873451 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 TPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPI 234
            TPY+GG+F L  + P  YP +PP+V FLT+I+H NV    G + LDILK++WSPA T+  V  A+ ++  +P   +P+
Sbjct:   47 TPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124          
The following BLAST results are available for this feature:
BLAST of FC873451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
UBC84_DROME1.851e-1438.10Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC3_ARATH1.851e-1436.73Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC20_ARATH1.851e-1442.35Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC11_YEAST3.158e-1438.04Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC11_SCHPO5.387e-1435.79Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC19_ARATH7.035e-1442.35Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2C_MOUSE9.188e-1440.70Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA9.188e-1440.70Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN9.188e-1440.70Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC21_ARATH9.188e-1444.87Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873451 ID=FC873451; Name=FC873451; organism=Citrus clementina; type=EST; length=646bp
GGAACACCATACCAAGGGGGTATATTTTTTCTTGACATAACATTTCCAAC
TGATTATCCGTTCAAACCTCCAAAGGTGGCATTTCTAACTCGAATCTACC
ACTGCAATGTTGATTCTGCTGGCAATGTTAATTTGGATATCTTGAAGGAC
AGTTGGAGTCCAGCTCTGACAATTACAAAGGTGCTACTTGCAGTCAGATC
AATGTTCACAAACCCTAGCCTTCATAATCCCATTGTTCCTGGCATTGCCC
ACTTGTACTTAGAAGATAAAGCTAAACATGATCAACTAGCAGCAGAGTGG
ACACTGCGATTTGCCAAGTAATGAATCCAATGAAAGAGCTGACACCGCTT
AACATTTCGATGTTGTTGTAGATTCCTTATCAGCATGTCGTTATTAGTCC
AAGACTGCACCCATGCCACTTTCTTGAATATGCCCCTAGGCATCTATAAA
ATGCTCTCCAACATGAACTGCAATGTTATCCTTGCAACTATATCACGTTT
GAAAGCAACTGTGAGAAATTCAGCTTATTGTAAATGTCTTGCCTCATATG
GTTACATCAATATTTAGTTGCTGTGTCGAAATAAAATCATTCCACCACCC
AAGCAAGAGGTGATGGATTTTATTTTTTAAAAAAAAAAAAAAAAAA
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